Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 >seq13 Length=2031768 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || |||| || || ||||| || || ||| | || Sbjct 490115 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 490174 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || ||||| ||||| | ||| ||||| Sbjct 490175 GATACTATCGAAAATGTGAAAGCCAAAATTCAG-GACAAGGAGGGCATTCCCCCTGATCA 490233 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||||| || |||||||| ||||||||||||||| | |||| | ||||||| || Sbjct 490234 GCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAA 490293 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || ||||| || || ||| |||| || | |||||||| || || Sbjct 490294 CATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGGTAT 490344 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||||||| | ||| || || |||||||| || |||||||| |||||||||||| Sbjct 489524 GACAAAGAGGGAATTCCCCCCGACCAGCAGAGACTCATTTTTGCGGGAAAACAATTGGAA 489583 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | ||||||| ||||| || || ||||| || || ||| |||| || Sbjct 489584 GATGGAAGAACTCTCTCCGATTACAACATCCAGAAGGAATCCACCCTACACTTGGTCCTA 489643 Query 28767 AGATTACGAGGAGGGAT 28783 | ||| |||| || || Sbjct 489644 CGTTTAAGAGGTGGTAT 489660 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || |||| || || ||||| || || ||| | || Sbjct 489659 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489718 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || ||||| ||||| | ||| ||||| Sbjct 489719 GATACTATCGAAAATGTGAAAGCCAAAATTCAG-GACAAGGAGGGCATTCCCCCTGATCA 489777 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||||| || |||||||| ||||||||||||||| | |||| | ||||||| || Sbjct 489778 GCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAA 489837 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || ||||| || || ||| |||| || | ||| |||| || || Sbjct 489838 CATCCAGAAGGAATCCACCCTACACTTGGTCCTACGTTTAAGAGGTGGTAT 489888 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || |||| || || ||||| || || ||| | || Sbjct 489887 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489946 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || ||||| ||||| | ||| ||||| Sbjct 489947 GATACTATCGAAAATGTGAAAGCCAAAATTCAG-GACAAGGAGGGCATTCCCCCTGATCA 490005 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||||| || |||||||| |||||||||||||| | |||| | | ||||| || Sbjct 490006 GCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAA 490065 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || ||||| || || ||| |||| || | |||||||| || || Sbjct 490066 CATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGGTAT 490116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | ||||| || ||||| ||| || ||| | || Sbjct 490343 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 490402 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | || ||||| || ||||||||| | ||| ||||| Sbjct 490403 GACACGATTGAAAATGTGAAAGCCAAAATACAGGATAAAGAGGGAATTCCCCCCGATCAG 490462 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| || ||||| ||||||||||||||||| | ||| | |||| || ||| Sbjct 490463 CAGAGACTCATATTTGCCGGCAAACAATTGGAAGACGGAAGAACCCTATCCGACTACAAC 490522 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 || || || ||||||||| | ||| | ||| || Sbjct 490523 ATACAGAAGGAATCTACTTTACACTTAGTACTA 490555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425390552661492