Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5 233 1e-55 seq9 131 1e-24 >seq5 Length=1370936 Score = 233 bits (258), Expect = 1e-55 Identities = 619/934 (66%), Gaps = 25/934 (3%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| ||||| || | || |||||||||||| | || | || || |||||| Sbjct 542685 GAAGATGGCATTTTCGAGGTGAAGGCCACAGCTGGAGATACCCACTTGGGAGGAGAAGAT 542626 Query 475400 TTTGATAATAGACTTGTATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTT--- 475456 ||||| || ||| | || | |||||||||||||| ||||| ||||||| || Sbjct 542625 TTTGACAACAGATTGGTCAACTTTTGTGTTGAAGATTTTAAGAGAAAAAATAGAGGCAAA 542566 Query 475457 GATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAG 475516 ||| | || | | | | ||| || ||| | || ||||| ||||| | || ||| Sbjct 542565 GATTTATCTAAAAATAGCAGAGCGTTGAGAAGGCTAAGAACCCAATGTGAGAGAGCCAAG 542506 Query 475517 CGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATT 475576 || || | || ||| | || ||| | || | ||| ||||||| ||||||||||| ||| Sbjct 542505 CGTACTTTGTCCTCTTCCACCCAAGCCACCATCGAAATTGATTCCCTTTTTGAAGGTATT 542446 Query 475577 GATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGA 475636 || || | | | | || || | |||||| || | ||| ||| ||| ||| Sbjct 542445 GACTACAGTGTGACGGTGAGCAGAGCCAGATTTGAGGAGCTATGTATTGACTACTTCAGA 542386 Query 475637 AAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAG-- 475694 | ||| | || || || | ||| | | |||| | | ||| || | ||| Sbjct 542385 GACACACTCATTCCTGTGGAGAAGGTTTTGAAAGATGCCA----TGATGGATAAGAAGAG 542330 Query 475695 --TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCT 475752 | || ||| |||| |||||||| ||||| || |||||||||||||| ||| ||| Sbjct 542329 CGTGCACGAAGTTGTCCTTGTAGGTGGTTCCACGAGAATTCCAAAAATTC---AAACGCT 542273 Query 475753 --TTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTA--AATCCTGATGAAGCT 475807 || | | |||| ||||| ||| | || | || | || ||||||||||| Sbjct 542272 CATTAAGGAGTTTTTCAATGG--AAAGGAAGCCTGCAGGTCGATTAACCCTGATGAAGCC 542215 Query 475808 GTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAAC-T 475866 || || ||||| || || || |||||||| ||||| || ||| | |||| | | | | Sbjct 542214 GTCGCGTATGGTGCAGCAGTGCAAGCAGCCATTTTGTCTGGTGA-TCAGTCCAATGCCGT 542156 Query 475867 AAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGG 475926 | || | | || | || || | || || | ||| | ||||| | ||||| Sbjct 542155 GCAGGATTTACTCCTCTTAGATGTGTGCTCTCTATCCCTCGGTTTGGAAACCGCAGGAGG 542096 Query 475927 GATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAA-ATCAAAAGTAT 475985 ||||||| || || ||||| ||||| || | |||||| || || | | ||| | | Sbjct 542095 TGTTATGACCAAGCTGATTGAGAGAAACACCACCATCCCAGCGAAGAAGAGCCAAA-TCT 542037 Query 475986 TTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAA 476045 || |||| ||| ||||||| ||| || ||| |||||| | | ||||| || ||| Sbjct 542036 TTACCACCTATGCTGATAACCAACCAGGTGTCTTAATCCAAGTGTACGAAGGAGAGAGAG 541977 Query 476046 AATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTC 476105 | || || || || ||| | || | ||| | || || ||||| || ||||||| Sbjct 541976 CCCTAACAAAGGACAACAACCTGTTGGGTAAATTTCACCTAGACGGTATCCCCCCTGCTC 541917 Query 476106 CCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATG 476165 | || ||| || ||||||||||| || |||||||||||||| |||||||| ||||| | Sbjct 541916 CTAGGAAAGTACCCCAAATTGAAGTCACCTTTGATATTGATGCCAATGGTATCCTTAACG 541857 Query 476166 TTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAATCGTG 476225 | || ||| ||| ||||| | | ||| || |||| || ||||| || | | Sbjct 541856 TCACCGCTGTTGAGAAATCCACTGGAAAGCAGAATCATATTACCATTACGAATGACAAGG 541797 Query 476226 GTAGATTTACTGAAGAACAAATTCAACGTATGGT 476259 | ||||| | |||| |||| | |||||||| Sbjct 541796 GAAGATTGTCCCCAGAAGAAATCGACCGTATGGT 541763 Score = 136 bits (150), Expect = 3e-26 Identities = 365/555 (66%), Gaps = 5/555 (1%) Strand=Plus/Minus Query 474326 ATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGT 474385 || ||||| || ||||| | ||||| || ||| || || | || ||| ||| | Sbjct 543312 ATCGCAATCGGCATTGACCTCGGAACCACCTACTCCTGCGTCGGCGTATGGAGAAACGAA 543253 Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || ||||| || |||||||| ||||| || || ||||| || ||||| ||||| | || Sbjct 543252 AATGTAGATATCATTGCCAACGACCAGGGAAACAGAACCACCCCATCGTATGTGGCCTTC 543193 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 || || || || || || ||||||||||| || | |||| || || || | Sbjct 543192 ACGGACACGGAGAGACTAATAGGAGATGCTGCGAAGAACCAAGTGGCGAGGAACCCAGAG 543133 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || | || ||||| || || || || || | || || || | | || ||| Sbjct 543132 AACACCGTCTTCGATGCGAAGAGGTTAATCGGAAGGAAGTTCACCGAGTCGTCCGTGCAA 543073 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAA---TGTTGGTGGTAAACCATATATA 474622 |||||| || ||||| |||| || | | ||||| || || || || Sbjct 543072 AGCGATATGAAGCACTGGCCCTTTACCGTCAAATCCGGTGTTGATGAGAAGCCCATGATT 543013 Query 474623 GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 || | | || ||| || | ||| ||| || || |||| || || |||||| Sbjct 543012 GAGGTGAGCTACCAAGGGGAGAAGAAATTATTCCACCCAGAGGAAATCTCCTCCATGGTT 542953 Query 474683 TTAGCCAAA-ATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 || || ||| |||||| ||| || | | | | ||| | | | ||||||| Sbjct 542952 TT-GCAAAAGATGAAAGAAAATGCAGAAGCGTTTTTGGGAAAGTCCATCAAAAATGCAGT 542894 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || || ||||| |||||||||||||| ||| | ||||| || || || || || | Sbjct 542893 GATCACCGTGCCAGCCTATTTTAATGATTCCCAAAGACAAGCCACGAAGGACGCAGGTAC 542834 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||||| ||| | ||||| | | |||||||| || ||||| ||||| || |||| || Sbjct 542833 CATTGCCGGTTTGAATGTCATGAGAATTATTAACGAGCCAACCGCAGCTGCTATTGCGTA 542774 Query 474862 TGGTCTTGATAAGAA 474876 ||||||| |||| || Sbjct 542773 TGGTCTTCATAAAAA 542759 >seq9 Length=1923364 Score = 131 bits (144), Expect = 1e-24 Identities = 134/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 290828 CCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCA 290887 ||| ||| ||| | ||||| ||||| || || ||||||| | ||||| | ||||||| Sbjct 1254504 CCAAATGCTAAGGCCGCTGCGGTTGGCTCGTTAATAATTCGAAGGACATCCAAACCTGCA 1254445 Query 290888 ATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTA 290947 |||||| | | |||| || || || | ||||| ||||||||| |||||||| ||||| Sbjct 1254444 ATTTTTCCTGCATCTTTGGTAGCTTGCCTTTGCGAATCATTAAAGTAAGCAGGCACTGTG 1254385 Query 290948 ATAACAGCtttttccactttctttttcaaataattttctgccatttgttttattt 291002 |||||||||| | |||||| || |||||| ||||| ||| ||| ||| |||| Sbjct 1254384 ATAACAGCTTGGTGTACTTTCCTTCCCAAATAGTTTTCAGCCGTTTCTTTCATTT 1254330 Score = 96.9 bits (106), Expect = 2e-14 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 ||||| | ||||||||| |||| || || | ||| | ||| ||||| | || Sbjct 1254320 GTTTTGGAAAAAATGAAAGAAACGGCTGAAAAC-TATTTGGGAAGGAAAGTACACCAAGC 1254378 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || || || || || || || ||||||||||| ||| | ||||| || |||||||| || Sbjct 1254379 TGTTATCACAGTGCCTGCTTACTTTAATGATTCGCAAAGGCAAGCTACCAAAGATGCAGG 1254438 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 || |||||||||| | |||| | || |||||||| || ||||| ||||| || | || Sbjct 1254439 AAAAATTGCAGGTTTGGATGTCCTTCGAATTATTAACGAGCCAACCGCAGCGGCCTTAGC 1254498 Query 474859 TTATGGTCTTGATAAGA 474875 | ||| | || |||| Sbjct 1254499 ATTTGGGTTAGAAAAGA 1254515 Score = 87.8 bits (96), Expect = 1e-11 Identities = 186/278 (67%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 475886 GACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATT 475945 || || | ||| || || ||||| | ||||| | || || || | || || | || Sbjct 1255127 GATGTGATTCCCCTATCTCTAGGTATAGAAACCCTAGGTGGAGTTTTCACCAAATTGATC 1255186 Query 475946 GACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAAT 476005 ||||||| || | ||||| || || || | | |||||||| |||| || Sbjct 1255187 AACAGAAACACGACCATCCCGACGAAGAAGTCGCAGATCTTTTCCACCGCAGCTGACAAC 1255246 Query 476006 CAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAAC 476065 |||||| || | |||| || | || |||| |||||| || | | |||||||| Sbjct 1255247 CAAACACAGGTGAGCATCAAAGTGTTCCAAGGAGAAAGAGAAATGGCATGCGATAATAAA 1255306 Query 476066 AAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATT 476125 | | ||| | || || | | || ||||| ||||| || |||||||| ||||||||| Sbjct 1255307 ATGTTAGGATCGTTCGATTTAGTGGGAATTCCCCCTGCACCTAGAGGAGTCCCTCAAATT 1255366 Query 476126 GAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAA 476163 ||||| || || ||| | || ||||| | ||| |||| Sbjct 1255367 GAAGTCACCTTCGATGTGGACGCAAACGCGATTATTAA 1255404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268061324946704