Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq13 165 1e-35 seq11 102 1e-16 >seq13 Length=2031768 Score = 165 bits (182), Expect = 1e-35 Identities = 181/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 193120 AAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAA 193179 ||| || ||| | ||||||||||| || ||||| | || || |||| || || | Sbjct 490583 AAGGAAATTAAAAACCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTA 490524 Query 193180 TATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCT 193239 | || |||||||||| ||||| || || |||||||| |||||||| || | ||||| Sbjct 490523 TGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCT 490464 Query 193240 GTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTAT 193299 | ||||| || || ||||| |||||||| |||||||||| ||| | |||| ||| || | Sbjct 490463 GCTGATCGGGGGGAATTCCCTCTTTATCCTGTATTTTGGCTTTCACATTTTCAATCGTGT 490404 Query 193300 CGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 |||| ||||| || || || || || || || || || ||||| || ||||| ||||||| Sbjct 490403 CGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCA 490344 Query 193360 T 193360 | Sbjct 490343 T 490343 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| || || || |||| || | || | || || || || Sbjct 489895 AATTTGCATACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTT 489836 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| | ||||| ||| || ||||||||||| |||||||| | |||||| || Sbjct 489835 GTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTG 489776 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || || || || || || ||||||| ||| | |||| ||||||||||| Sbjct 489775 ATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGA 489716 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || ||||||||||| || ||||| |||||||| Sbjct 489715 TGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 489659 Score = 149 bits (164), Expect = 1e-30 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | |||| || | || | || || || || Sbjct 490351 AATTTGCATACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTT 490292 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| | ||||| ||| || ||||||||||| |||||||| | |||||| || Sbjct 490291 GTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTG 490232 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || || || || || || ||||||| ||| | |||| ||||||||||| Sbjct 490231 ATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGA 490172 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || ||||||||||| || ||||| |||||||| Sbjct 490171 TGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 490115 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | |||| || | || | || || || || Sbjct 490123 AATTTGCATACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTT 490064 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | ||||| || || ||||||||||| |||||||| | |||||| || Sbjct 490063 GTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTG 490004 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || || || || || || ||||||| ||| | |||| ||||||||||| Sbjct 490003 ATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGA 489944 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || ||||||||||| || ||||| |||||||| Sbjct 489943 TGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 489887 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| || || || |||| || | || | || || || || Sbjct 489667 AATTTGCATACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTT 489608 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| | ||||| ||| || ||||||||||| |||||||| | |||||| || Sbjct 489607 GTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTG 489548 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || ||||| ||||| || |||||||| | |||| ||| ||| || || || Sbjct 489547 GTCGGGGGGAATTCCCTCTTTGTCCTGTATTTTCGACTTTACATTCTCAATTGTGTCCGA 489488 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 ||||| || || | || || ||||| |||| Sbjct 489487 TGACTCGACGTCCAAGGTGATGGTTTTTCCTG 489456 >seq11 Length=2067354 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || ||||| | | | |||| ||||| || ||||| || |||||||| || Sbjct 205826 ATCCTCCAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTT 205767 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||| | ||| | || ||| || ||||| | ||| || || || || || Sbjct 205766 ATCTTCAATTTTTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGAT 205707 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || |||| |||||||| ||||||||||| Sbjct 205706 GGTTTTTCCGGTTAATGTTTTTACGAATATTTGCAT 205671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899623496871360