Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq13 192 2e-43 >seq13 Length=2031768 Score = 192 bits (212), Expect = 2e-43 Identities = 592/909 (65%), Gaps = 15/909 (2%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 || |||| || || ||||| ||||| || || |||||||| ||||| ||||| || Sbjct 540374 TACTCTATGATTTCGCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTC 540315 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 |||||| ||||| | || ||||| || ||||| || || || || ||||| Sbjct 540314 GATTTAGCATTACAGGAGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTC 540255 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTG-TATCTGCCTTC 155806 | |||||| | ||| ||||| | ||| | ||| |||| ||| | | ||| Sbjct 540254 TGCAGAATGGCAAACCATAGGTCCTGCGCAAGGACGGTTTTCTTGCCCATATTTTC-TTC 540196 Query 155807 CGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG 155866 | |||||||| |||| | | || | | ||||| || | | || |||| || || Sbjct 540195 C---TCATATTTGGTATATAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGG 540139 Query 155867 GCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATAC 155926 || | || ||||| | || | |||| ||||||| | |||| | || |||||||| Sbjct 540138 ACATTCATTCGGGCACATCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAG 540079 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| |||| | || ||||| || ||||| || || ||| || | |||||||| Sbjct 540078 GTCAGGTACCCATACGGCGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATT 540019 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 || || || ||||| ||||| ||| || | || || || | |||| || || Sbjct 540018 TTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAA 539959 Query 156047 ACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 || || ||||| || ||| || |||||||||| |||||| | ||| || || | Sbjct 539958 GGATCCTTTTCTCTTTCCCCCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCT 539899 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| || | | || |||||| |||| || || || | || | |||| Sbjct 539898 CAGCATTGGGACTAACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTACGAATTTTGCCC 539839 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 | || || || | | |||||| ||||| | | ||| ||| || || | Sbjct 539838 CCTAATATCCTGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTG 539779 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 ||||| ||| | || || |||||||| || || || ||| | || ||| | || || Sbjct 539778 CTTTAGAGTCTCAAATATGCCTTCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGA 539719 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | | || || | ||||| || | ||||| | ||||||||||| || | ||||| Sbjct 539718 AGACATCTGTGGCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATA 539659 Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAAT--CTTCTCAAGATTAGACCCGTGAATA 156401 ||| | |||||| || ||| ||||| || | |||||| |||| ||| || Sbjct 539658 CTTTTGAGACATCAGATGGTACGTCTC--TAGTGCCTTCTCTAGATCTCCTATGTGGATC 539601 Query 156402 CAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGC 156461 | ||||| || |||||| || ||| || || | ||| | ||| |||| |||||| Sbjct 539600 CCAATAGATACTCTCATCAGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGA 539541 Query 156462 AGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTG 156521 || ||||| | | ||||| || |||||||| || || || | |||||| | || Sbjct 539540 AGGAGGTAGGACCTTTCCAATGTCTTAAACCCAAAGTAGTCGTAATTAAAATCTCTTGTG 539481 Query 156522 TAATCAATC 156530 || |||||| Sbjct 539480 TAGTCAATC 539472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471765779142076