Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 4e-13 seq11 89.7 4e-13 >seq13 Length=2031768 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || |||| || || ||||| || | || || | | Sbjct 489659 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489718 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| || ||| ||||| || ||| | ||| ||||| Sbjct 489719 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 489778 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| |||| |||||| ||||| |||| |||| ||||| | | ||||||||| Sbjct 489779 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 489838 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || ||||| || | ||| |||| Sbjct 489839 ATCCAGAAGGAATCCACCCTACACTTGGT 489867 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || |||| || || ||||| || | || || | | Sbjct 489887 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489946 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| || ||| ||||| || ||| | ||| ||||| Sbjct 489947 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 490006 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| |||| |||||| ||||| |||| || | ||||| | ||||||||||| Sbjct 490007 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 490066 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || || ||||| || | ||| |||| || Sbjct 490067 ATCCAGAAGGAATCCACCCTACACTTGGTCTT 490098 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || |||| || || ||||| || | || || | | Sbjct 490115 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 490174 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| || ||| ||||| || ||| | ||| ||||| Sbjct 490175 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 490234 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| |||| |||||| ||||| |||| |||| ||||| | | ||||||||| Sbjct 490235 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 490294 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || || ||||| || | ||| |||| || Sbjct 490295 ATCCAGAAGGAATCCACCCTACACTTGGTCTT 490326 >seq11 Length=2067354 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||||||||| || ||||| |||||||| |||||||| ||| | || |||| | Sbjct 205668 AAAATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCA 205727 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | || ||| || |||| || || ||||| | || || Sbjct 205728 TCCGAAACGATTAGGAACGTTAAATCAAAAATTGAAGATAAGGAAGGAATCCCACCTGAC 205787 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || ||| | || || ||| ||||||||| ||| |||| || ||| Sbjct 205788 CAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTAC 205847 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || || || || || ||||| |||| Sbjct 205848 AACATCCAGAAGGAGTCCACCCTGCACTTGGT 205879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412827773418764