Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5 369 3e-96 seq7 194 1e-43 seq9 104 2e-16 >seq5 Length=1370936 Score = 369 bits (408), Expect = 3e-96 Identities = 1026/1549 (66%), Gaps = 46/1549 (3%) Strand=Plus/Plus Query 281363 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 281422 || |||||||| | ||| ||||| ||||||| || || || ||||| ||| Sbjct 541787 GACAATCTTCCCTTGTCATTCGTAATGGTAATATGATTCTGCTTTCCAGTGGATTTCTCA 541846 Query 281423 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 281482 | || || || ||||| |||||||||||||| | |||||| |||||||||||||| || Sbjct 541847 ACAGCGGTGACGTTAAGGATACCATTGGCATCAATATCAAAGGTGACTTCAATTTGGGGT 541906 Query 281483 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 281542 || || ||||||| ||||| || || | | |||| | |||| || || || Sbjct 541907 ACTTTCCTAGGAGCAGGGGGGATACCGTCTAGGTGAAATTTACCCAACAGGTTGTTGTCC 541966 Query 281543 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 281602 || || | || || || ||| | | |||||| || | | ||| ||||| | | Sbjct 541967 TTTGTTAGGGCTCTCTCTCCTTCGTACACTTGGATTAAGACACCTGGTTGGTTATCAGCA 542026 Query 281603 TAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATT 281661 || || ||||| | | ||| | || | | || || || |||||||| ||||| | || Sbjct 542027 TAGGTGGTAAAGATT-TGGCTCTTCTTCGCTGGGATGGTGGTGTTTCTCTCAATCAGCTT 542085 Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 |||||||| ||| || || ||||| ||||| || || |||| ||||| | |||| Sbjct 542086 GGTCATAACACCTCCTGCGGTTTCCAAACCGAGGGATAGAGAGCACACATCTAAGAGGAG 542145 Query 281722 AATATTTTGAA-GTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCA 281779 | || || | | || | | | |||| |||| ||| |||||||| | || ||| Sbjct 542146 TAAATCCTGCACGGCATTGGACTGATC-ACCAGACAA-AATGGCTGCTTGCACTGCTGCA 542203 Query 281780 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT--TTACCATTGAAAA 281837 ||||| || || ||||||||||| |||| | | | || || || |||||||||| Sbjct 542204 CCATACGCGACGGCTTCATCAGGGTTAATCGA--CCTGCAGGCTTCCTTTCCATTGAAAA 542261 Query 281838 AATTTGAAAGAAG---TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 | | || || ||| || || ||||| | | || || || || | |||| Sbjct 542262 ACTCCTTAATGAGCGTTTGAATT---TTTGGAATTCTCGTGGAACCACCTACAAGGACAA 542318 Query 281895 TTTCATGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 ||| ||||| || | || ||||| | | ||| ||||| || || || || Sbjct 542319 CTTCGTGCACGCTCTTCTT-ATCCATCATGGCATCTTTCAAAACCTTCTCCACAGGAATG 542377 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || |||| || |||| ||| || || || ||| | ||||| | | || ||| Sbjct 542378 AGTGTGTCTCTGAAGTAGTCAATACATAGCTCCTCAAATCTGGCTCTGCTCACCGTCACA 542437 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 | || ||||| ||||| || | ||||||| ||| || || | ||| || ||||| || Sbjct 542438 CTGTAGTCAATACCTTCAAAAAGGGAATCAATTTCGATGGTGGCTTGGGTGGAAGAGGAC 542497 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT-- 282131 | | ||| || || | |||||| || ||||| |||| || ||| | ||| || Sbjct 542498 AAAGTACGCTTGGCTCTCTCACATTGGGTTCTTAGCCTTCTCAACGCTCT-GCTATTTTT 542556 Query 282132 -GATTCAAATCTGT---TTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 282187 ||| |||||| | | ||| ||||||||| |||||||||||||| | | || | Sbjct 542557 AGAT--AAATCTTTGCCTCTATTTTTTCTCTTAAAATCTTCAACACAAAAGTTGACCAAT 542614 Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 | || ||||||||||| |||||||| | |||| ||| | || || | || | |||| Sbjct 542615 CTGTTGTCAAAATCTTCTCCTCCCAAGTGGGTATCTCCAGCTGTGGCCTTCACCTCGAAA 542674 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||||||||| | | || | ||||| |||||| || || | || ||||| Sbjct 542675 ATGCCATCTTCAATCGTGAGGAGGGATACATCGAAGGTTCCTCCTCCGAGGTCGAAAATG 542734 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || | ||| ||||| | | ||||||| |||||||||||||| |||||| || ||| Sbjct 542735 AGAATGTTCTTTTCTCCCTTTCCCTTTTTATGAAGACCATACGCAATAGCAGCTGCGGTT 542794 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || ||||||||||||| ||||| | ||| ||||| | ||||| || || |||||| Sbjct 542795 GGCTCGTTAATAATTCTCATGACATTCAAACCGGCAATGGTACCTGCGTCCTTCGTGGCT 542854 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTTT 282486 |||||||| ||||| |||||||| || || || || || || |||| | | | |||| Sbjct 542855 TGTCTTTGGGAATCATTAAAATAGGCTGGCACGGTGATCACTGCATTTTTGATGGACTTT 542914 Query 282487 TCCAATATAAGCGCT--TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 |||| || |||| ||| ||| |||||| || |||| ||| || || |||| Sbjct 542915 CCCAA---AAACGCTTCTGCATTTTCTTTCATCTTTTGCAAAACCATGGAGGAGATTTCC 542971 Query 282545 TCTGG--AGAAT-ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 282601 ||||| |||| ||| ||| || ||| || || |||| || || | | Sbjct 542972 TCTGGGTGGAATAATTTCTT---CTCCCCTTGGTAGCTCACCTCAATCATGGGCTTCTCA 543028 Query 282602 CCAAC-----ATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGT 282656 |||| ||| | || |||| ||||| | |||||||| ||| || | Sbjct 543029 TCAACACCGGATT--TGACGGTAAAGGGCCAGTGCTTCATATCGCTTTGCACGGACGACT 543086 Query 282657 CATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG 282716 | | || | || || ||||| | || ||||| || | || || ||| || | Sbjct 543087 CGGTGAACTTCCTTCCGATTAACCTCTTCGCATCGAAGACGGTGTTCTCTGGGTTCCTCG 543146 Query 282717 CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATG 282776 | |||| | || || |||||||| || || || || || || || | ||||| | Sbjct 543147 CCACTTGGTTCTTCGCAGCATCTCCTATTAGTCTCTCCGTGTCCGTGAAGGCCACATACG 543206 Query 282777 ATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATA 282836 |||| || || | || || || || || ||||| || || || || | ||| ||||| Sbjct 543207 ATGGGGTGGTTCTGTTTCCCTGGTCGTTGGCAATGATATCTACATTTTCGTTTCTCCATA 543266 Query 282837 CACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATTTT 282885 | || || || | || ||||| | ||||| || || || || || Sbjct 543267 CGCCGACGCAGGAGTAGGTGGTTCCGAGGTCAATGCCGATTGCGATGTT 543315 >seq7 Length=1497819 Score = 194 bits (214), Expect = 1e-43 Identities = 469/703 (67%), Gaps = 13/703 (2%) Strand=Plus/Minus Query 281303 TTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCA 281362 || ||||| | ||| |||||| || || || |||||||| |||| ||||| || | Sbjct 672566 TTCTTATCCTCATCTGCAAATTTTTCTGCATCGTTAATCATTTTCTCGATTTGTTCCTTG 672507 Query 281363 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 281422 |||| |||||| || || ||||| |||||| ||| || |||| ||| || Sbjct 672506 GAGAGTCTTCCCTTATCGTTCGTAATGGTAATACCTTTGCTCTTTCCTGTTCCTTTGTCT 672447 Query 281423 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 281482 | || || | ||||| ||||| ||||| | ||| |||||||| |||| || Sbjct 672446 TCCGCTTCTACGTGGAGAATGCCATTCTTATCCACAGTAAAGGTGACTTCTATTTTGGGT 672387 Query 281483 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 281542 || |||||||| || |||||||| ||| | | |||| |||||| | | |||||| Sbjct 672386 ACTCCTCTCTGTGCTGGTGGGATTCCTGTGAGTTCAAATTTTCCCAAAAGGTGATTATCC 672327 Query 281543 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 281602 || || ||| || ||| || ||||| | ||| || || | | ||| |||||| Sbjct 672326 TTTGTTAATGCTCTTTCTCCTTCGAACACTTGAATGAGGACAGCTGGTTGGTTATCTTGG 672267 Query 281603 TAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATT 281661 || || | ||| |||| || || || || || ||||||||| | ||||| | Sbjct 672266 TAGGTGGAAAAGG-TCTGAGACTTCTTCGTTGGGATGACTGTGTTTCTTTTAATAAGTTG 672208 Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 ||||| ||||| ||| | ||||||| || | | || ||||| ||||| | ||| || Sbjct 672207 CGTCATGATACCTCCAACGGTTTCTATTCCTAACGTGAGTGGAGTCACATCTAGTAGAAC 672148 Query 281722 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 | || ||| | || ||| || |||| | || | | ||||| || |||||||| Sbjct 672147 GACATCTTGTAATTCTTC-TC-------CCAAAATGATTC-CAGCTTGGATGGCAGCACC 672097 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 281841 ||||| ||||||||||| || || | | | |||| ||| || ||||| || || | Sbjct 672096 GTATGCTACAGCTTCATCTGGGTTTATACCTCTATTTGGTTCCTTTCCATTAAAGAATTC 672037 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 | | || |||| | || || ||||||| |||||||| || | ||||| |||| Sbjct 672036 TTTTATAATTTGTTGAATTTTTGGGATACGAGTAGATCCTCCTACGAGAACAATCTCAT- 671978 Query 281902 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960 || | || | || || ||||| || || || || | |||||||| | | Sbjct 671977 CAATTTTGCTCTTCTCATATTTTGCGTCATCTAGTACCTTCTTTACGGGTTCTAAAGTTT 671918 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 282003 ||||||| ||||| | | |||||| ||||| ||||| || Sbjct 671917 CTCTAAATAAGTCATCATTTAATTCTTCAAATTTGGCTCTCGT 671875 Score = 105 bits (116), Expect = 5e-17 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 |||| || ||||| | ||| ||||| ||||| || || ||||| || || ||||| | | Sbjct 671558 TCTTCCTTCTTATCCAAACCGTACGCCAAAGCTGCTGCGGTTGGCTCGTTTATAATACGC 671499 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | | || | |||||||| ||||||||||||| || |||||||| || | ||| || Sbjct 671498 ACGATGTTCAACCCAGCAATCGTTCCTGCATCTTTTGTTGCTTGTCTCTGCGCATCATTG 671439 Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--G 282503 ||||| || || ||||| | || || | | ||| ||||| | | ||| | || | Sbjct 671438 AAATACGCTGGCACAGTTACCACTGCGTTCTTAACTGGCTTTCCCA-AAAAG-GATTGAG 671381 Query 282504 CTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 282549 || ||| ||||||||| ||||| ||| | ||||||||||| Sbjct 671380 CTATTTCTTTCATTTTCTCTAAAACCATGGCACTGATTTGTTCTGG 671335 >seq9 Length=1923364 Score = 104 bits (114), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||| | || || || || || ||||| || |||||||||| | |||| | ||| ||| Sbjct 1254504 CCAAATGCTAAGGCCGCTGCGGTTGGCTCGTTAATAATTCGAAGGACATCCAAACCTGCA 1254445 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| ||||||||||||| || ||||| ||||| ||||| ||||| || ||||| || || Sbjct 1254444 ATTTTTCCTGCATCTTTGGTAGCTTGCCTTTGCGAATCATTAAAGTAAGCAGGCACTGTG 1254385 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT---GCTGTTTGTTTCATTTTA 282520 ||||| || | ||||| |||| | ||| | || || |||| ||||||||| Sbjct 1254384 ATAACAGCTTGGTGTACTTTCCTTCCCAAATA---GTTTTCAGCCGTTTCTTTCATTTTT 1254328 Query 282521 CTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 |||| || | ||||| ||| ||||||| |||| Sbjct 1254327 TCCAAAACGCATGCTCCTATTTGACTTGGGGAATATTTCTTG 1254286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740495484813048