Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq13 158 1e-33 seq11 104 2e-17 >seq13 Length=2031768 Score = 158 bits (174), Expect = 1e-33 Identities = 622/968 (64%), Gaps = 19/968 (2%) Strand=Plus/Minus Query 148061 CTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTC 148120 |||||| ||||| ||||| ||||| || ||||| || |||| ||| ||| ||||| Sbjct 541188 CTGGTCGATGAAGGCGCCCCGGTCGGCCGCCATATCGATGATGTTCTTCTGCTTGATCTC 541129 Query 148121 CCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGA 148180 |||| | ||||| || ||| ||| | | ||||||| || ||| || || Sbjct 541128 CCAGACGGTCTTATAGAGCTCCTTCAAGTCGGCGGGAATTTCGCTAATGTATTGGACACT 541069 Query 148181 GCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAG 148240 ||| |||||| | | ||| | ||| || || | ||| | | |||| || Sbjct 541068 CCCGTTGTGCGCGATGAGCTGCTGCTTCATGTCCTCATCCCAGAGGCCGCGGTCGAAGAG 541009 Query 148241 GTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCC-GCAGAT 148299 ||| | | ||| | | |||||||| ||||| || ||| || |||| | || | Sbjct 541008 GTCCTTCAGCAGGTGGGGGTTCACCACGAAGAACTCTCCACTGAGGACCCGCCTGTAG-T 540950 Query 148300 ACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTG 148359 | | || || || |||| |||||||| |||||||| |||| ||| || | || | || Sbjct 540949 AAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGATG 540890 Query 148360 CCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCT 148419 | || |||||| || | || || || || | ||||||| | || || ||||| || Sbjct 540889 CAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGCCT 540830 Query 148420 TCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTC---ACGTTCCACATGTCGTACTGCA 148476 |||| | |||||||||| | | | | || ||||||||||| |||| | Sbjct 540829 TCAGTTCATCCCAGTCCCAATACTTCTTATCTACCTTAACATTCCACATGTCAAACTGAA 540770 Query 148477 GAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCA 148536 | || || ||||||| || || |||| ||| | || ||||| | | | |||| Sbjct 540769 GGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCTGGGCCA 540710 Query 148537 GTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA 148596 | || | | || | ||| || || || || |||||| |||| |||| ||| Sbjct 540709 GCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGTTTAGCT 540650 Query 148597 GCGCCGCCGACTCGCTTTCGTACGGCATACG-CAGCCGCACAAACGCGTCGGCAAGGCCC 148655 || || || |||||| || |||| ||| ||| || | ||| || || ||| Sbjct 540649 CTTTAGCAGAATCAGATTCGTAGGG-ATACCTCAGAAGCATGAAGGTGTCTGCCAGCCCC 540591 Query 148656 TGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGA 148715 || || || | ||| ||||| | |||| | ||||||| | || ||| | || Sbjct 540590 TGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCACGGGG 540531 Query 148716 TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGC 148775 |||| || | || || || | ||| | |||||| | | || |||||| | Sbjct 540530 TAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTTCGTAG 540471 Query 148776 AGC------AATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAG 148829 ||| || | ||| || ||| || | ||| | || | || ||||| ||| Sbjct 540470 AGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGATGGAG 540411 Query 148830 GCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGA 148889 || | |||||||||||| || || || | | | ||||||| ||| ||| ||| || Sbjct 540410 GCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGCAGAGG 540351 Query 148890 TTGCTGCATTTGATCACGCCCACGTTCTTTTGATT-GCTCTTGCTGTTGCACGCGTCCTT 148948 ||||| ||||| || ||||| || || ||||| | | | || || || | ||| || Sbjct 540350 TTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCA-TTACAGGAGTCTTT 540292 Query 148949 GTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGG 149006 |||||||||||| || | || ||||| | ||| | | || ||| || | || ||| Sbjct 540291 GTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCAT--AGG 540234 Query 149007 TCCTGCGC 149014 |||||||| Sbjct 540233 TCCTGCGC 540226 >seq11 Length=2067354 Score = 104 bits (114), Expect = 2e-17 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATC-GCC-CATCGTGGACGAGTCCTCGA 133512 || || | ||||||||| ||||| || ||||| || ||| || ||| ||||| | Sbjct 205876 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACA--TCCTCCA 205819 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||| || | || || |||| ||||||||| || ||||| |||||||| || | Sbjct 205818 ACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTCAA 205759 Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 | ||||| || | | | | || ||| |||| | |||||| || | ||||| |||||| Sbjct 205758 T-TTTTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTT 205700 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| | ||||||||||| || ||||| Sbjct 205699 CCGGTTAATGTTTTTACGAATATTTGCAT 205671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483404194495520