Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq13 150 1e-31 >seq13 Length=2031768 Score = 150 bits (166), Expect = 1e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||||| ||||| ||||| ||| || || || |||||||||||||| Sbjct 489886 ACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 489827 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || |||||||||||||| |||||||| | | ||||||||| | || Sbjct 489826 GAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGG 489767 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| |||||| |||| |||| || | || ||| |||||| | Sbjct 489766 AATGCCCTCCTTGTCCTGAATTTTGGCTTTC-ACATTTTCGATAGTATCGGATGATTCTA 489708 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || ||||||| ||| || ||||| || |||||| Sbjct 489707 CATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCATA 489658 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| ||||| || ||||| ||||| ||| || || || ||||||||||| || Sbjct 490114 ACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 490055 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | |||| |||||||||||||| |||||||| | | ||||||||| | || Sbjct 490054 GAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGG 489995 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| |||||| |||| |||| || | || ||| |||||| | Sbjct 489994 AATGCCCTCCTTGTCCTGAATTTTGGCTTTC-ACATTTTCGATAGTATCGGATGATTCTA 489936 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || ||||||| ||| || ||||| || |||||| Sbjct 489935 CATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCATA 489886 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| ||||| || ||||| ||||| ||| || || || |||||||||||||| Sbjct 490342 ACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 490283 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || |||||||||||||| |||||||| | | ||||||||| | || Sbjct 490282 GAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGG 490223 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| |||||| |||| |||| || | || ||| |||||| | Sbjct 490222 AATGCCCTCCTTGTCCTGAATTTTGGCTTTC-ACATTTTCGATAGTATCGGATGATTCTA 490164 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || ||||||| ||| || ||||| || |||||| Sbjct 490163 CATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCATA 490114 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||||| || || |||| ||| || || ||||||||||| ||||| Sbjct 490570 ACCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGA 490511 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | |||| ||||||||||| |||||||| || | | ||||||||| | || Sbjct 490510 TAGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGG 490451 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || ||||| |||| |||| || | |||||| ||| |||| Sbjct 490450 AATTCCCTCTTTATCCTGTATTTTGGCTTTC-ACATTTTCAATCGTGTCGGATGACTCCA 490392 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | ||| || ||||| || |||||| Sbjct 490391 CATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCATA 490342 Score = 118 bits (130), Expect = 7e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||||| ||||| ||||| ||| || || || |||||||||||||| Sbjct 489658 ACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 489599 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || |||||||||||||| |||||||| | | |||||| || | || Sbjct 489598 GAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGGTCGGGGGG 489539 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| |||||| | | |||| || | ||||| ||| || | Sbjct 489538 AATTCCCTCTTTGTCCTGTATTTTC-GACTTTACATTCTCAATTGTGTCCGATGACTCGA 489480 Query 33701 CGTCAACCGTGATCGTTTTACCTG 33724 |||| | ||||| ||||| |||| Sbjct 489479 CGTCCAAGGTGATGGTTTTTCCTG 489456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692991292160