Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq13 125 6e-24 >seq13 Length=2031768 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || |||| ||||| | ||||| | || || ||| | | Sbjct 489659 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489718 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || ||| |||||| || || ||||| || || || |||||| Sbjct 489719 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 489778 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||||||||| | || |||||| | ||||||| |||| | || ||||||||| Sbjct 489779 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 489838 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||||||| | || || || || | || ||||| || Sbjct 489839 ATCCAGAAGGAATCCACCCTACACTTGGTCCTACGTTTAAGAGGTGG 489885 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || |||| ||||| | ||||| | || || ||| | | Sbjct 490115 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 490174 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || ||| |||||| || || ||||| || || || |||||| Sbjct 490175 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 490234 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||||||||| | || |||||| | ||||||| |||| | || ||||||||| Sbjct 490235 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 490294 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || || ||||||||| | || || || || Sbjct 490295 ATCCAGAAGGAATCCACCCTACACTTGGTCTT 490326 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || |||| ||||| | ||||| | || || ||| | | Sbjct 489887 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489946 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || ||| |||||| || || ||||| || || || |||||| Sbjct 489947 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 490006 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||||||||| | || |||||| | ||||| | |||| | || |||||||| Sbjct 490007 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 490066 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || || ||||||||| | || || || || Sbjct 490067 ATCCAGAAGGAATCCACCCTACACTTGGTCTT 490098 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || ||||| | ||||| | || || || | | Sbjct 490343 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 490402 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| ||||| ||||||||||| || || ||||||||| Sbjct 490403 GACACGATTGAAAATGTGAAAGCCAAAATACAGGATAAAGAGGGAATTCCCCCCGATCAG 490462 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||||||| | | |||||||||| | ||||| | |||| | ||| ||||| Sbjct 490463 CAGAGACTCATATTTGCCGGCAAACAATTGGAAGACGGAAGAACCCTATCCGACTACAAC 490522 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| || | || ||||| || | ||||||| || Sbjct 490523 ATACAGAAGGAATCTACTTTACACTTAGTACTACGTCTGAGAGGTGG 490569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 258/392 (66%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 137019 GTACAGATTACTAGTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGT 137078 ||| | |||||| ||| ||||||| |||||||||||||| |||| ||| || | ||| | Sbjct 540951 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 540892 Query 137079 CGCTGTCGGCATGTAAGCGATCAACAATGAATTCCGTAAACCGTG-TACGGCCAATTGTT 137137 || ||||||||| || | | | ||||||| |||||||| | | |||| || Sbjct 540891 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTC--TTAATTTTT 540834 Query 137138 G-CTTGAGCTCTTTCCAGTTCCACAGATTGTTCGATTGGGTTATATTCCACAAATCAAAC 137196 | ||| || || | ||||| ||| || || | | | |||||||| |||||| Sbjct 540833 GCCTTCAGTTCATCCCAGTCCCAATACTTCTTATCTACCTTAACATTCCACATGTCAAAC 540774 Query 137197 TGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTC 137256 || | | ||| | || || ||||| | || | ||||||| ||| | ||| | Sbjct 540773 TGAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCTGG 540714 Query 137257 GCCAGTTCAATACTCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTC 137316 ||||| || || | | | || ||||| || || || ||| | ||| || | || Sbjct 540713 GCCAGCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGTTT 540654 Query 137317 AATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATCCAATATAGC--GAAAGCATCTGCAA 137374 | ||| |||| | |||||||| ||| | | | ||| ||| | ||||| | Sbjct 540653 AGCTCTTTAGCAGAATCAGATTCGTAGGG-ATACCTCAGA-AGCATGAAGGTGTCTGCCA 540596 Query 137375 GTCCTTGAATACCGATACCGATAGGTCTGTGT 137406 | || || | ||| || || || ||||||||| Sbjct 540595 GCCCCTGCACACCTATGCCTATGGGTCTGTGT 540564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445079111007360