Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq13 206 4e-48 >seq13 Length=2031768 Score = 206 bits (228), Expect = 4e-48 Identities = 971/1521 (64%), Gaps = 47/1521 (3%) Strand=Plus/Minus Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 ||||||||||||||| || || || | ||||| || || ||||||||||||| ||| || Sbjct 540951 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 540892 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 |||||| ||||| || || | | | ||| || | ||| || | | ||||| | Sbjct 540891 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGC 540832 Query 68868 TTTTAGATGTTTCCAATCCCAA-AGATCAGATGGTAC---AACATTCCAAAGATCGTATT 68923 || || | | ||| |||||| | || || ||| ||||||||| | || | | Sbjct 540831 CTTCAGTTCATCCCAGTCCCAATACTTCTTATC-TACCTTAACATTCCACATGTCAAACT 540773 Query 68924 GTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAG 68983 | || ||||| | || || || | || || ||||| ||||| | | | | | Sbjct 540772 GAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCTGGG 540713 Query 68984 CTAGTTCACAACTTGCC---TCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 | || || || | | | || || ||||| ||||| || || |||||||| | || | Sbjct 540712 CCAGCTC-CA--TGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 540656 Query 69041 TGAGATCTTGTGCT---TCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTG 69097 | || |||| || || ||| | || | ||||| | ||| || || | |||| Sbjct 540655 TTAGCTCTTTAGCAGAATC-AGATT--CGTAGGGATACCTCAGAAGCATGAAGGTGTCTG 540599 Query 69098 CCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTG 69157 ||| ||||| || || || || || ||||| |||||||| || || | | || || Sbjct 540598 CCAGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCT 540539 Query 69158 GAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCA 69217 | || || ||||| | |||||||||| | | ||| ||| | | ||| | Sbjct 540538 CCACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAA 540479 Query 69218 CGTCCTTTAGTTTGAGAAAATCAAATCGTC-CATCTATA-----ACAAACATATTCAGTG 69271 || | || || ||| | |||| || | ||| | || || | ||| | Sbjct 540478 TTTCGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCG 540419 Query 69272 CTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTG 69331 | | || || | || || || || || || | | | | ||| | ||| || || Sbjct 540418 CGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGC 540359 Query 69332 TACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGG 69391 || || || |||||||| || || |||| ||||| |||||| || ||||||| Sbjct 540358 AGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGG 540299 Query 69392 CGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCC 69451 ||| ||||| || || | ||| ||| ||||| |||||| | | ||| | || Sbjct 540298 AGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACC 540239 Query 69452 AAACGACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTAT 69508 | | | || ||| | ||||| || | | | || |||| ||||||| |||| Sbjct 540238 ATAGGTCCTGCGCA---AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTAT 540182 Query 69509 ATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACA 69568 ||| | ||||||||| |||||||| || ||| || ||||||||||| || |||| Sbjct 540181 ATAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACA 540122 Query 69569 TCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAG 69628 |||| | ||| | || ||||| |||| ||||||||||| || || | ||| | | Sbjct 540121 TCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGG 540062 Query 69629 CTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAA 69688 | || ||||| || | ||| ||||| ||||| |||||| ||| || | || Sbjct 540061 CGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAA 540002 Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 | || | ||| || || ||||| ||||| | || | || | | ||| | | | | Sbjct 540001 ATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAAGGATCC---TTTTCTCT 539945 Query 69749 TTCCTCCC---TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAA 69805 |||| ||| || |||| || || ||||||| |||| | || |||||||| || | | Sbjct 539944 TTCCCCCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTA 539885 Query 69806 TACCATTAGATTTACCATTTGTTC--CAGAAATATAACTTCCTCTTG--CGCGAATATTA 69861 || || || | || || || | | || || | || ||| | | ||||| Sbjct 539884 ACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTACGAATT----TTGCCCCCTAATATCC 539829 Query 69862 CTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTG 69921 | | | || || || || ||| |||| || | ||||| | || | || Sbjct 539828 TGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTC 539769 Query 69922 TCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGA 69981 ||| |||| || || || || | ||||| || ||||||||| |||||| || Sbjct 539768 TCAAATATGCCTTCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGT 539709 Query 69982 TG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 | || | || |||| ||| || || ||||| | |||||| ||||| | |||| ||| Sbjct 539708 GGCCTGGGT-GTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGA 539650 Query 70041 AAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGA 70099 | ||||| ||| || || | || |||| ||| || || || || || || | | Sbjct 539649 CATCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCTCCTATG-TGGATCCCAATAGATA 539591 Query 70100 CACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATG 70159 | | ||||| || ||| || |||| || | | || ||| ||| | ||||| | Sbjct 539590 CTCTCATCAGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGG 539531 Query 70160 ATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAA 70219 | |||||| || ||||||||||| |||| ||| ||| |||||| ||| ||| Sbjct 539530 ACCTTTCCAATGTCTTAAACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCT 539471 Query 70220 CAGAATTTAGTTTATCCTTAT 70240 | ||| | | ||||||||| Sbjct 539470 CCTTATTCAATCTATCCTTAT 539450 Score = 138 bits (152), Expect = 2e-27 Identities = 354/530 (67%), Gaps = 12/530 (2%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA-TTAGACC 39690 || || || ||||||| |||||||| || ||| || |||||||| ||| || | | Sbjct 1883528 TGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGCAATTTGTTC 1883469 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC-AGAAAAGAAGATGCCTTCTACTG 39749 |||| || | |||||| |||||| || ||| ||| | ||| | |||||| || || Sbjct 1883468 T-GCTTCTTAAACCAAAAGATGGCA-CAGAAGCTCCCACTAAATAGGATGCCCTCCACAC 1883411 Query 39750 CTGCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATCCACTTCTGTG 39806 |||| || || | || ||| | || | |||||||| |||||| || || Sbjct 1883410 ATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATT---TATCCATTTGGCTG 1883354 Query 39807 CCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA-ATGT 39865 |||| |||||| || || ||| || || |||| || || | |||||||| || Sbjct 1883353 CCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATTCATTC 1883294 Query 39866 TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATG 39925 | | | || | ||||| | || | || || |||| || || | || |||||||| Sbjct 1883293 TCTCCTTCTCG-TCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATGGATA 1883235 Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985 || || | || || || || ||||||| |||| || || |||| || | Sbjct 1883234 TTCTCTACAGCAATTTGGAAGGCGTAAAATTTCTTTGCCTCGGTTATTTTCACTTGGCGT 1883175 Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045 ||||| | ||| | |||||| || ||||||||||| || ||||| || ||||| Sbjct 1883174 AAAAATTTGCTCGCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAGGCCAAC 1883115 Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTT 40105 || ||||| || |||| |||||||| | ||||| | | || || | ||| | Sbjct 1883114 ACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAATCGCTG 1883055 Query 40106 GATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 || | || | ||| || || ||||| || |||||||| ||||||||||| Sbjct 1883054 GACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTA 1883005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686885204682720