Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq8 111 1e-19 seq13 98.7 8e-16 >seq8 Length=1678596 Score = 111 bits (122), Expect = 1e-19 Identities = 305/464 (66%), Gaps = 25/464 (5%) Strand=Plus/Plus Query 19318 ATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGT 19377 ||||| || |||| ||| ||||| ||||| | | |||||||| |||||| Sbjct 1599201 ATTAAGCAGCTGGGGATTAAGCATGTGAAGGGACTCATTTTGTATGGGCCCCCGGGTACA 1599260 Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAA 19434 |||||||||||||| || ||| | | | ||| || | ||| | |||| |||| Sbjct 1599261 GGAAAAACATTAATAGCTAGACAGATAGGAAAAACGTTGAATGCAAGAGAACC---CAAA 1599317 Query 19435 ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGA 19494 ||| | ||||| || ||||| ||||||||||||||||| || || || ||||| | | Sbjct 1599318 ATTATTAATGGCCCAGAAATATTAAATAAATATGTAGGGCAGTCCGAGGAAAACATTAGG 1599377 Query 19495 CGTTTGTTTGCTGACGCTGA--AGAAGAACAA-AAACGTTTAGGG--CGCAAAAGTTCTT 19549 ||| ||| || || || || || |||| | || || | | || || Sbjct 1599378 AATTTATTTAAAGATGCAGAGCAGGAGTACAAGCAGAGTGGAGAGAACTCACAA-----C 1599432 Query 19550 TGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---------TT 19600 | ||||| || || |||| ||| | || || || ||| || ||||| || Sbjct 1599433 TACACATCATCATTTTAGACGAAATCGATGCTATATGTCGACAGAGAGGTAGTGCTGCTT 1599492 Query 19601 CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTG 19660 | ||| | || ||| |||||| |||| ||||| || ||||| ||| | ||||||| Sbjct 1599493 CAAGTGGGACGGGTGTAAATGACAGCATTGTGAATCAGCTGCTGTCCAAAATTGACGGTG 1599552 Query 19661 TTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACA 19720 ||||| |||||||||| || | || || ||||| || || | || |||| || Sbjct 1599553 TTAACAGCTTGAATAATATACTACTGATCGGGATGACCAACCGAATTGACCTAATCGATG 1599612 Query 19721 GCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 ||| | || ||||||| | || ||| | | ||||| ||| Sbjct 1599613 ACGCTCTGTTGAGACCCGGGAGATTCGAACTGCACATCGAGATT 1599656 >seq13 Length=2031768 Score = 98.7 bits (108), Expect = 8e-16 Identities = 339/521 (65%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 43742 TACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTA 43801 |||||||| || ||||||| || ||||| || || ||| |||| ||| | | || ||| Sbjct 1883005 TACAAAAAGGCGGAGGCGTCCTTCTGGACGGCCGAGGAAATTGACTTGTCCAGCGATTTA 1883064 Query 43802 GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861 | ||| |||||| | ||||||||||| ||| || ||||| || Sbjct 1883065 AAAGATTTCGAAAAATTAAATGATAATGAAAAACATTTCATAAAACACGTGTTGGCCTTC 1883124 Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTT 43921 ||||| || || || || || || |||||| | | || ||| | |||| Sbjct 1883125 TTTGCAGCCAGTGATGGAATTGTTTTGGAAAATCTAGCGAGCAAATTTTTACGCCAAGTG 1883184 Query 43922 CAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCG 43981 || || | || ||| ||||| | || |||||||| |||| ||||| |||||| Sbjct 1883185 AAAATAACCGAGGCAAAGAAATTTTACGCCTTCCAAATTGCTGTAGAGAATATCCATTCG 1883244 Query 43982 GAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT-T 44040 || | ||||| | |||| || | ||||| ||||| | | | ||| || || || | Sbjct 1883245 GAGACATACAGCTTGTTGATTGACAATTACATAAAAGACGAGAAGGAG-AGAATGAATCT 1883303 Query 44041 GTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 ||| | ||||| |||| | || || | ||| | ||||| ||||| ||||| Sbjct 1883304 CTTTCACGCGATTGAAAACATCCCCGCTGTGAAAAACAAAGCTTTGTGGGCAGCCAAATG 1883363 Query 44101 GATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCAT 44160 ||||||| | | ||||||| |||| | | || || |||| |||||| ||||| Sbjct 1883364 GATAAATGATACCAACTCTTTTGCAGAAAGGATAGTAGCCAATGCATGTGTGGAGGGCAT 1883423 Query 44161 TTTCTTT-TCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA-TGCCT 44218 | ||| ||| | | || ||||| |||||||| ||||| | || | ||| Sbjct 1883424 CCTATTTAGTGGGAGCTTCTG-TGCCATCTTTTGGTTTAAGAAGC-AGAACAAATTGCAC 1883481 Query 44219 GGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG 44259 || | || || ||||||||||| || || |||||||| Sbjct 1883482 GGACTCACCTTCAGTAATGAGTTAATTAGCCGAGATGAAGG 1883522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397442688701740