Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 3e-15 >seq13 Length=2031768 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| || ||||| ||||| || || || || ||||||||| | | | | ||||||| Sbjct 490552 TACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTC 490493 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| ||||| | ||||| | ||| ||||| || || | ||||||||||| Sbjct 490492 CAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCCTG 490433 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || ||| ||||| |||| | ||||| | | || || || || || || | || Sbjct 490432 TATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTT 490373 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| || || |||||||| ||||||||| Sbjct 490372 TCCCGTAAGCGTCTTCACAAAAATTTGCATA 490342 Score = 96.9 bits (106), Expect = 3e-15 Identities = 265/405 (65%), Gaps = 6/405 (1%) Strand=Plus/Minus Query 130778 AGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAAT 130837 ||||| || || |||||| || || ||| |||| ||||| ||||||||||| || | Sbjct 540965 AGGACCCGCCTGTAGTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGA 540906 Query 130838 ATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGC 130897 ||||| | |||| ||| || |||||| || | | || ||||| | | ||||||| Sbjct 540905 ATTTGAGAAGTAGATGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGC 540846 Query 130898 GTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---G 130954 || | |||||| ||||| ||||||||| ||||| | | | | || || Sbjct 540845 TTCTTAATTTTTGCCTTCAGTTCATCCCAGTCCCA---ATACTTCTTATCTACCTTAACA 540789 Query 130955 TTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAG 131014 |||||||| ||||| || || || |||| || || ||||| | | | | || || Sbjct 540788 TTCCACATGTCAAACTGAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATAT 540729 Query 131015 ATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCG 131074 ||| | | | ||||| || || |||||| || || ||||| ||||| ||| Sbjct 540728 GGTCCATACAGCTGGGCCAGCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCG 540669 Query 131075 GCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATA 131134 |||| ||| |||| | ||| || | ||||| ||| | ||| | || Sbjct 540668 AAAATTCTTTTGTTTAGCTCTTTAGCAGAATCAGATTCGTAGGGATACCTCAGAAGCATG 540609 Query 131135 AAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGT 131179 || | |||||| || ||||| | || | ||| | ||||| ||| Sbjct 540608 AAGGTGTCTGCCAGCCCCTGCACACCTATGCCTATGGGTCTGTGT 540564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424920168415776