Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 3e-14 >seq13 Length=2031768 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || || || | ||| ||||| || ||||| || || || Sbjct 490569 CCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGAT 490510 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| | |||||| ||||||||||| | | ||| || || || || Sbjct 490509 AGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGA 490450 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | |||||| || | |||| || ||| | ||| || | ||| ||||| ||||| Sbjct 490449 ATTCCCTCTTTATCCTGT-AT-TTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCA 490392 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | ||| ||||||||||| ||||| Sbjct 490391 CATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 490343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719059312284