Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 3e-14 >seq13 Length=2031768 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || || || || || || || ||||||| ||| || Sbjct 489887 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489946 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| ||||| || || |||| || | Sbjct 489947 GATACTATCGAAAAT--GTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATC 490004 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | | |||||||| |||||||||||||| |||| | | | | || ||||||| Sbjct 490005 AGCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACA 490064 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | || ||||| |||||||| || || || Sbjct 490065 ACATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 490113 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || || || || || || || ||||||| ||| || Sbjct 490115 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 490174 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| ||||| || || |||| || | Sbjct 490175 GATACTATCGAAAAT--GTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATC 490232 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | | |||||||| |||||||||||||| || | | | | | |||||||||| Sbjct 490233 AGCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACA 490292 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | || ||||| |||||||| || || || Sbjct 490293 ACATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 490341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || ||||| || || || || ||||||| || || Sbjct 490343 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 490402 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || ||| |||||| || ||||| || |||| || | Sbjct 490403 GACACGATTGAAAAT--GTGAAAGCCAAAATACAGGATAAAGAGGGAATTCCCCCCGATC 490460 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | | || |||||||| ||||||||||| |||| | | | | | ||||| |||| Sbjct 490461 AGCAGAGACTCATATTTGCCGGCAAACAATTGGAAGACGGAAGAACCCTATCCGACTACA 490520 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || ||||| || || || | ||| || | || || Sbjct 490521 ACATACAGAAGGAATCTACTTTACACTTAGTACTACGTCTGAGAGGTGG 490569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355850481723396