Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq13 145 2e-29 >seq13 Length=2031768 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 |||||| | ||| || ||||| || || |||||||| ||||| | || || |||||||| Sbjct 489871 TAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATC 489812 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| || || || || || || || | || || ||||| |||| || |||||||| Sbjct 489811 TTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 489752 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || |||||| |||||||| || || || ||| || || |||||||| || Sbjct 489751 CTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGT 489692 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || ||||| ||||| | ||||| Sbjct 489691 CTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 489659 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| || ||||| || || |||||||| ||||||| || || ||||| ||||| Sbjct 490096 GACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTC 490037 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || || || || || | || || ||||| |||| || ||||||||||| Sbjct 490036 CAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTG 489977 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 || || |||||| |||||||| || || || ||| || || |||||||| ||||| Sbjct 489976 AATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTT 489917 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| ||||| | ||||| Sbjct 489916 TCCTGTTAGCGTCTTCACAAAAATTTGCAT 489887 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| || ||||| || || |||||||| ||||| | || || ||||||||||| Sbjct 490324 GACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTC 490265 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || || || || || | || || ||||| |||| || ||||||||||| Sbjct 490264 CAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTG 490205 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 || || |||||| |||||||| || || || ||| || || |||||||| ||||| Sbjct 490204 AATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTT 490145 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| ||||| | ||||| Sbjct 490144 TCCTGTTAGCGTCTTCACAAAAATTTGCAT 490115 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| | ||| || || || || ||||| || || | ||||| ||||| || Sbjct 490555 TAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTC 490496 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| || ||||| || || || || | || || || || |||| ||| || || || Sbjct 490495 TTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATC 490436 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || |||||| ||||| || ||||| || || || || || ||||| || Sbjct 490435 CTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGT 490376 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || ||||| ||||| | ||||| Sbjct 490375 CTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 490343 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 |||||| | ||| || ||||| || || |||||||| ||||| | || || |||||||| Sbjct 489643 TAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATC 489584 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| || || || || || || || | || ||||| || |||| ||| || ||||| Sbjct 489583 TTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTC 489524 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || || || || || || ||||| || || || || | ||||| || Sbjct 489523 CTGTATTTTCGACTTTACATTCTCAATTGTGTCCGATGACTCGACGTCCAAGGTGATGGT 489464 Query 211082 CTTTCC 211087 ||||| Sbjct 489463 TTTTCC 489458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159111187707020