Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq13 84.2 2e-11 >seq13 Length=2031768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 206/310 (66%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||||| || ||| |||| || | | ||| || | || ||||| ||||| |||| ||| Sbjct 1883283 GTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATGGATATTCTCTACAGC 1883224 Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTC 4930 ||| || || ||||||| | || || |||| || |||| | ||||| || | Sbjct 1883223 AATTTGGAAGGCGTAAAATTTCTTTGCCTCGGTTATTTTCACTTGGCGTAAAAAT-TTGC 1883165 Query 4931 TA-CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989 | ||| ||||| || || || |||||||||||||| || ||||| || || || Sbjct 1883164 TCGCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAGGCCAACACGTGTTTTA 1883105 Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || | | ||| | | || | ||||| | | ||||| | | || |||| Sbjct 1883104 TGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAATCGCTGGACAAGTCAA 1883045 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 ||| || | ||||| || ||||| ||||| |||||||| | | ||||| || || | Sbjct 1883044 TTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAATCCCAAACGTCTGGGT 1882985 Query 5110 ACTGAATCGG 5119 || ||| || Sbjct 1882984 ACAAAATGGG 1882975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427035297575084