Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq13 165 1e-35 >seq13 Length=2031768 Score = 165 bits (182), Expect = 1e-35 Identities = 956/1513 (63%), Gaps = 31/1513 (2%) Strand=Plus/Minus Query 75751 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGA 75810 ||||||||||||||| || || || | ||||| ||||| |||| |||||||| ||| || Sbjct 540951 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 540892 Query 75811 AGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 75870 ||||||||||| || || | | | ||| || | ||| || | | ||||| | Sbjct 540891 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGC 540832 Query 75871 TTTTAGATATTTCCAATCCCAA-AGATCTGATGGTAC---AACATCCCAGAGATCGTATT 75926 || || | | ||| |||||| | ||| || ||| ||||| ||| | || | | Sbjct 540831 CTTCAGTTCATCCCAGTCCCAATACTTCTTATC-TACCTTAACATTCCACATGTCAAACT 540773 Query 75927 GTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAG 75986 | || ||||| | |||||| || | || || || || | || | | | | Sbjct 540772 GAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCTGGG 540713 Query 75987 CTAGTTCGCAACTCGCC---TCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 76043 | || || || | | | || |||||||| ||||| || || |||||||| | || | Sbjct 540712 CCAGCTC-CA--TGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 540656 Query 76044 TAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTA 76103 | || |||| || | | || | ||||| | ||| || || | ||||| | Sbjct 540655 TTAGCTCTTTAGCAGAATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCCA 540596 Query 76104 GTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAA 76163 | ||||| || || || || || ||||| |||||||| ||||| | || || | Sbjct 540595 GCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCA 540536 Query 76164 TAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGT 76223 ||||| ||||| | |||||||||| | | ||| | | || | ||| | | Sbjct 540535 CGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTT 540476 Query 76224 CCTTTAGTTTGAGAAAATCAAATTTTC-CATCT----ATC-ACAAACATATTAAGAGCTA 76277 | | || || ||| | ||||| || | ||| ||| || || | || || | Sbjct 540475 CGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGA 540416 Query 76278 TAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGC 76337 | || || | || || ||||| || || | | | || ||| | ||| || || || Sbjct 540415 TGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGC 540356 Query 76338 ATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGT 76397 | || || ||||| || || || || | ||||| || || || ||||| |||| Sbjct 540355 AGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGT 540296 Query 76398 CCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 76457 | || || || | | ||| || ||||| ||||| | | ||| | ||| | Sbjct 540295 CTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATA 540236 Query 76458 CGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCT-CTT--TCATATTGTGTATATA 76514 | | || | | | ||| | | | | | | ||| ||||||| ||||||| Sbjct 540235 GGTCCTGCGCA---AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTATATA 540179 Query 76515 ACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCA 76574 || ||| ||||| |||||||| || ||| || |||||||||||||| ||||||| Sbjct 540178 ACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACATCA 540119 Query 76575 ATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAA 76634 | | ||| | || |||||| || | |||||||| || ||||||| ||||| || Sbjct 540118 AAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGT 540059 Query 76635 TAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACT 76694 || ||||| | | ||| | ||||| ||||| ||| || ||| |||| || | Sbjct 540058 AGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATT 539999 Query 76695 CCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTAC 76754 | | ||| || || ||||| ||||| | || | || | | | || | | | | | Sbjct 539998 CGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGA-AGGATCCTTTTCTCTTTCCC 539940 Query 76755 CTCCC-TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 | ||| || |||| ||| || ||||||| |||| |||| |||| |||||| | | ||| Sbjct 539939 CCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTAACCCG 539880 Query 76814 TTAGATGTACCATTTGTTC--CAGAAATATAACTTCCACATGCACGAATATTACTAATAG 76871 || || | || || || | | || || | || | | | ||||| | | Sbjct 539879 TTGGAAATGCCGTTAGTCCCTCTGATGTACGAATTTTGC--CCCCTAATATCCTGCACGG 539822 Query 76872 ATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 | || || || || ||| |||| || | ||||| | || | || ||| | | Sbjct 539821 CCACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTCTCAAATA 539762 Query 76932 TGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 76991 |||| || || || ||||| || ||||||||| |||||| || | Sbjct 539761 TGCCTTCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTGGCCTGG 539702 Query 76992 CAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGAT 77051 || || | ||| ||||| ||||| | ||| || ||||| | |||| ||| | |||| Sbjct 539701 GTGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACATCAGAT 539642 Query 77052 TGTATGTTTC-AATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATC 77110 ||| || || | | || | |||| ||| | | || || || | || || | |||| Sbjct 539641 GGTACGTCTCTAGTGCCTTC-TCTAGATCTCCTATGTGGATCCCAATAGATACTCTCATC 539583 Query 77111 AACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 77170 | || ||| || |||| || | |||| ||| ||| | | ||| || ||||| Sbjct 539582 AGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACCTTTCC 539523 Query 77171 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTT 77230 || || ||||| ||||| |||| ||| ||| |||||| ||| ||| || ||| Sbjct 539522 AATGTCTTAAACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCTCCTTATTC 539463 Query 77231 AGTTTGTCCTTAT 77243 | | | ||||||| Sbjct 539462 AATCTATCCTTAT 539450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712909910703360