Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13 141 2e-28 seq11 105 2e-17 >seq13 Length=2031768 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || || |||||||| || ||||| || || || ||| || || Sbjct 489662 CAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCCGAT 489721 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||||||||| || || || || || || ||||| Sbjct 489722 ACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAGCAG 489781 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || |||||||| | ||||||||||| ||||| ||||||| ||| || Sbjct 489782 AGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAACATC 489841 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 489842 CAGAAGGAATCCACCCTACA-CTTG 489865 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || || |||||||| || ||||| || || || ||| || || Sbjct 490118 CAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCCGAT 490177 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||||||||| || || || || || || ||||| Sbjct 490178 ACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAGCAG 490237 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || |||||||| | ||||||||||| ||||| ||||||| ||| || Sbjct 490238 AGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAACATC 490297 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 490298 CAGAAGGAATCCACCCTACA-CTTG 490321 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || || |||||||| || ||||| || || || ||| || || Sbjct 489890 CAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCCGAT 489949 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||||||||| || || || || || || ||||| Sbjct 489950 ACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAGCAG 490009 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || |||||||| | ||||| ||||| ||||| | ||||| ||| || Sbjct 490010 AGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAACATC 490069 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 490070 CAGAAGGAATCCACCCTACA-CTTG 490093 Score = 129 bits (142), Expect = 1e-24 Identities = 139/183 (76%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||||||||| |||||| | || || || || ||||| || ||||| || || | Sbjct 489456 CAGGAAAAACCATCACCTTGGACGTCGAGTCATCGGACACAATTGAGAATGTAAAGTCGA 489515 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | || ||||||||||| ||||| || || |||||||| |||| || || || ||||||| Sbjct 489516 AAATACAGGACAAAGAGGGAATTCCCCCCGACCAGCAGAGACTCATTTTTGCGGGAAAAC 489575 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | | ||||||||||| ||||| ||||||| ||| |||| || ||||| || || || | Sbjct 489576 AATTGGAAGATGGAAGAACTCTCTCCGATTACAACATCCAGAAGGAATCCACCCTACA-C 489634 Query 178126 TTG 178128 ||| Sbjct 489635 TTG 489637 >seq11 Length=2067354 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| ||||| | || |||||||| |||||||| || ||||| Sbjct 205668 AAAATGC---AAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAG 205724 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || |||||| ||| ||| ||| | || || ||||||||||| || Sbjct 205725 GCATCCGAAACGATTAGGAACGTTAAATCAAAAATTGAAGATAAGGAAGGAATCCCACCT 205784 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| | || || | | ||||| ||| | || |||| ||| | | || || Sbjct 205785 GACCAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGAC 205844 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || ||||| |||| Sbjct 205845 TACAACATCCAGAAGGAGTCCACCCTGCA-CTTG 205877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203688818129112