Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12 334 1e-86 seq11 203 5e-47 seq3 181 2e-40 seq6 87.8 3e-12 seq13 84.2 3e-11 >seq12 Length=891477 Score = 334 bits (370), Expect = 1e-86 Identities = 561/794 (71%), Gaps = 23/794 (3%) Strand=Plus/Minus Query 205359 TAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACC-AATATTAT 205417 ||| || ||||||| | | |||||||||| ||| | ||| |||||||| |||| || Sbjct 690789 TAACTGAATTTTTAAGCTTTCAATATGATTATTATAAACATGAGCATTACCCAATAC-AT 690731 Query 205418 GAATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTAT 205477 | ||||||||| ||||| ||| ||| || ||||| |||||||| || |||| | || Sbjct 690730 GTATAAATTCAGCTGGTTGTAAGTTACATACTTGTGCTATCATATATGTAAATATAGAAT 690671 Query 205478 AACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGAC 205537 || ||||| |||||||| || |||| || | |||| |||||||||||||| || Sbjct 690670 AAGAAGCAATGTTAAATGGAACTCCTAGTCCTAAATCACAAGATCTTTGATACATAATAC 690611 Query 205538 ATGTAAGATATTTATTATTAATTACATGAAATTGTACAAAACA-ATGACAAGGTGGTATA 205596 ||| | |||| || || |||| |||||| ||| || | |||||| || |||| Sbjct 690610 ATGATA---ATTTTCCATCAAAAACATAAAATTG-ACATAAAATATGACATGGAGGTAAT 690555 Query 205597 ACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGt 205656 |||| || || | |||| | |||||| || ||| || || |||| || ||| Sbjct 690554 GCCATTTTATCTAAATCTTTTACATTCCATGCACATAAAATAATTCGTCTACATGTAGGA 690495 Query 205657 ttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTT 205716 | |||||| ||| ||||||||||| | ||| |||||||| |||| || | ||||||| Sbjct 690494 TCATTTTTAATTAAATTTATAATATTTTTTAGTTGATCAACACCTTTATCTTTATAATTA 690435 Query 205717 GTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCT 205776 || |||||| |||||| |||||||||||| | |||||| || ||||||| ||||| Sbjct 690434 TCATGCATATCTGTATATTCAGCACCAAAATGTCTCCATTGGAATCCATAAATAGGACCA 690375 Query 205777 AAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattt 205836 | |||| ||| ||||| | || | || | || | ||| | || |||||| Sbjct 690374 AGATCATTAACTTCTCTATGAAATAATTTTCTATTATCTAAAAATTCTCTTGTTCCATTA 690315 Query 205837 tcatcccaaatatggattcctttattttttaGAA--TATTTGTATTAGTTGATCCAGATA 205894 | |||| |||| | | ||| ||| | | || ||||| ||| ||| ||| || Sbjct 690314 GCTTCCC--ATATTCTTACATTTTTTTCTAACAATGTATTTCCATTTGTTTCTCCTCTTA 690257 Query 205895 TAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATG 205954 ||||||||||||||||||||| ||| |||| | ||| | | ||||||||| ||||||| Sbjct 690256 TAAACCATAATAATTCTTCAATAATACCTCGCACAAATAATTTTTTTGTTGTTAATAATG 690197 Query 205955 GAAATGAATCATCTAATTTATATTTCATAGTTAAACCATATACAGTTTTTGTATCTACAC 206014 |||| | | || ||| ||| ||||||| | | ||| || | || | | |||| Sbjct 690196 GAAAATATTGATTTAAATTAAATTTCATCATATATCCAAATTTACTTAACACACCAACAC 690137 Query 206015 CTGTTCTAT--TTTTGGTTATTCTTCCATTAGATAATATTTCTGATATACCTTTTAAATA 206072 ||||||||| | ||| |||| |||||| || ||| || ||||| |||||||| Sbjct 690136 CTGTTCTATCATCTTGTTTAT--TTCCATGCATTATTATATCATATATAATATTTAAATA 690079 Query 206073 TTGATATTCATCTGATGA-TGTGAT-TTCCattataatata-attttaattttat--ata 206127 |||||||||| ||||| | | || || || || |||| ||||||| |||| | | Sbjct 690078 TTGATATTCA--GGATGATTTTTATATTTTATGCTATTATATATTTTAAAATTATGAACA 690021 Query 206128 t-ttaataattttt 206140 | || | ||||||| Sbjct 690020 TGTTCAGAATTTTT 690007 >seq11 Length=1061054 Score = 203 bits (224), Expect = 5e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| ||| |||| || ||||| |||||| | || | ||| || Sbjct 508673 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508732 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||||||||||||||| || || ||||||||| Sbjct 508733 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 508792 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || ||||||||||| ||| || ||||| || ||||||||| Sbjct 508793 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 508852 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||||||||| ||||| |||||| | ||| |||| ||||| Sbjct 508853 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTAT 508902 Score = 190 bits (210), Expect = 3e-43 Identities = 165/205 (80%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 |||| |||||||||||| | || | || || |||||| ||| ||| | ||| | Sbjct 508470 CAGGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTA 508529 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 ||||||||||||||||||| || || |||||||||||||| | |||||||| || |||| Sbjct 508530 AAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAAC 508589 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 ||||||| ||| || ||||| || ||||||||||||||||||||||||||||| |||| Sbjct 508590 AATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATT 508649 Query 124744 TGGTTTTACGTTTACGAGGTGGTAT 124768 | |||||| | ||| |||| ||||| Sbjct 508650 TAGTTTTAAGATTAAGAGGAGGTAT 508674 Score = 190 bits (210), Expect = 3e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| ||| |||| || ||||| |||||| | || | ||| || Sbjct 508901 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508960 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||| ||||||||||| || || || ||||| ||| Sbjct 508961 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 509020 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || ||||||||||| ||| || ||||| || ||||||||| Sbjct 509021 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 509080 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||||||||| ||||| |||||| | ||| |||| ||||| Sbjct 509081 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTAT 509130 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| ||| |||| || || ||||||||| | || | ||| || Sbjct 509129 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 509188 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||||||||||||||| || || ||||| ||| Sbjct 509189 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCAA 509248 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || ||||||||||| ||| || ||||| || || ||||| Sbjct 509249 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 509308 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||||||||||||||| || ||| | |||||| | ||| |||| ||| Sbjct 509309 ATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGGT 509356 >seq3 Length=1857262 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 1608744 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1608685 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| |||||||||||||||||||| || || |||||||| Sbjct 1608684 TGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCA 1608625 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| |||||||| ||||| ||| | |||||||| || ||||| Sbjct 1608624 ACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTATAA 1608565 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||||||| ||||| || |||||||| Sbjct 1608564 TATTCAAAAAGAGTCAACCTTACATTTGGT 1608535 Score = 102 bits (112), Expect = 1e-16 Identities = 295/456 (65%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 202739 TATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATAT 202798 |||||| ||| |||| | | ||||| ||||| |||| | | |||| ||| ||| Sbjct 541152 TATTTTGACATATATAAGTTTATGTCAAAATTACGCTTACAACTATTATAATCCATGTAT 541211 Query 202799 CTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGAC 202858 | |||||| ||||| | |||||| ||||| | |||||||| ||| ||| || Sbjct 541212 CGAATTTTCCCAAAAACACTTCTTTCATTCCAACTTTGATCATGAACACCCATAATAGAT 541271 Query 202859 CACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAA 202918 |||| ||||||| |||| | |||||| ||| || ||| || |||| Sbjct 541272 GACATGATGGAAACATATGCATTAGCTGTTTTTCCATCAATAGAAAATTCATTGGTTAAT 541331 Query 202919 TNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTT-TGTCCATTCTAATAtttttttAGC 202977 | |||||| |||| | ||| || ||| | | |||||||| || Sbjct 541332 TTAATTGCGCATTTTAATGCTG-TTCTAGAATTTTCTGACCAGTTCAGAATTTTTTTTGC 541390 Query 202978 CCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGC 203037 |||||||||||||||| || | || ||| |||| | | || | |||| ||| | Sbjct 541391 CCAATACATTCTTAAAAATTCGTGAATTGTACCTTCATTTATTAATTGTAATTGGCAACA 541450 Query 203038 ATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTT 203097 |||||| | | | ||| || |||||| || | | || ||||| ||| || Sbjct 541451 ATTCCAAATGTCATTATGTGTCCTAGCATTTCGAAAATCTTCGTAATCATATAAATGATT 541510 Query 203098 TCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTAT 203157 ||| | || || |||| |||| | | | ||||||||| || || || || | Sbjct 541511 TCTTTTGTCTAATTCGTGTTTTTTTAAACTCTCTTTTGCCCAATCTTTGGCCCCGTTAAA 541570 Query 203158 ATTATCGTAATTTTCATTATAATAACAAAAATTATC 203193 |||||| ||||||| |||||| |||||||||| || Sbjct 541571 ATTATCATAATTTTTATTATAGAAACAAAAATTGTC 541606 Score = 93.3 bits (102), Expect = 6e-14 Identities = 545/815 (67%), Gaps = 112/815 (14%) Strand=Plus/Plus Query 228315 attaattaaattaaatattagttcatgtaatataaa--aaatactaattttataattaat 228372 |||||||||| |||||| || || |||| |||| ||||| || |||||||||| Sbjct 426394 ATTAATTAAAGTAAATAATAT---ATATAAT-TAAAGTAAATAATA----TATAATTAAT 426445 Query 228373 ttagataatt-tGAAAGAATTAGATATATCTAGAAATTTTAATATAAATATTTCATCATT 228431 | | |||| | | | | ||||| ||| | || | ||| || |||| | | || || || Sbjct 426446 TAAAATAAATATTATATAATTAAATAAAATTACATATTATA-TATACACAATTAAT--TT 426502 Query 228432 ACCAAAATCATTAATCAAATTAA-ATATTAGGACATGTTATATAAAAAATAC-TAATT-- 228487 | |||| ||||| || || |||| | | || | | |||| |||| ||||| Sbjct 426503 A---AAATAATTAAAATAAACAATATATAATTA-AT-TAAAGTAAATAATATATAATTAA 426557 Query 228488 TTATAATTAAT-TTAGATAATTTGAAAG-AATTAGATATATCTAGAAATT--TTAATATA 228543 ||| ||| ||| ||| |||||| |||| || || |||||| |||| |||| ||| Sbjct 426558 TTAAAATAAATATTATATAATT--AAAGTAAATA-ATATAT-----AATTAATTAAAATA 426609 Query 228544 AATATTTCATCATTACCAAAATCATTGATTACATTAAATAT--TAATTCATGTTATATAA 228601 |||||| || |||| |||| ||||||||| |||| || | || || Sbjct 426610 AATATTATATAATTA------------ATTAAATTAAATATTATAATACA--TAATTGAA 426655 Query 228602 AACACACTAATTTTATAAATGATTTATATAATT--TGAAGGAATTGGATATATCTAGAAA 228659 || | ||| ||||| || |||||||||||| | || ||| |||| | || || Sbjct 426656 AATA----AATATTATATAT-ATTTATATAATTAATAAAATAATAATATATTTATAATAA 426710 Query 228660 TTA--TAATA-TAAATAT----TTCATCATTACCAAAATCATTAATCAAATTAAATATTA 228712 ||| ||| | ||||||| || || |||| ||||| | |||| | ||| | || | Sbjct 426711 TTAATTAAAATTAAATATTATATTTATAATTAATAAAAT-AATAAT-ACATTTATAATAA 426768 Query 228713 GTGATTGCGATATTAAAAATACTAATT-TTATAAATGAT-TTAGATAATTTGAAAGAATT 228770 | ||| | | ||| |||| || || | ||||| || ||| | | || ||| |||| Sbjct 426769 TTAATT---AAAATAATAATA-TATTTATAATAAAATATATTATAATAATTAAAACAATT 426824 Query 228771 AGATATATCTAA--CAATTATAATATAAATAT------TTCATCATTACCAAAAACATTG 228822 | ||||| ||| |||||||||| |||||| || || ||| ||||| || Sbjct 426825 A-TTATATTTAATTAAATTATAATA-AAATATAGTATATTAATTATT--TAAAAATAT-- 426878 Query 228823 ACTACATTAAATATTAGTTC-ATGTAAT-ATAAAAAATACtaattttataattaatttag 228880 | || ||| | | ||| | | || ||| || ||||||| |||| | || | || ||| Sbjct 426879 AATA-ATT-AGTGTTATTACTATAAAATAATTAAAAATA-TAATATATTATTAAAATTAA 426935 Query 228881 ataatttgaaagaattagatatatctaaaaattttaatataaatat-ttCATCATTACCA 228939 |||||| ||| || || |||||| ||| |||| |||| | | || || |||| | Sbjct 426936 CTAATTTAAAATAAATA-ATATATATAA-----TTAAAATAATTTTATTAATAATTATTA 426989 Query 228940 AAAT-CATTGATTA-CATTAAATATTAATTCATGTTATATAAACCATACTAATTTTAT-A 228996 |||| ||| ||| |||| ||| | | | | ||| |||| ||| | |||| || | Sbjct 426990 AAATATATTATTTATTATTATATAATTAATAGTATTAATTAAA--ATA-TTATTTAATAA 427046 Query 228997 AATGATTTATATAATTTGAAAGAATTAGATATATCTAACAATTATAATATAAATATTTCA 229056 ||| || ||||| || ||| || || ||| || ||| || |||||||| ||| || | Sbjct 427047 AATAATATATATTTATTTAAATAA-TAAATAAAT-TAATAA--ATAATATATATAATTAA 427102 Query 229057 TCATTACCAAATACATTAATTGAATTA-AATATTA 229090 | | | ||||| || ||| ||||| |||| || Sbjct 427103 T--TAAAAAAATATATATATTTAATTATAATAATA 427135 Score = 87.8 bits (96), Expect = 3e-12 Identities = 446/673 (66%), Gaps = 75/673 (11%) Strand=Plus/Plus Query 228285 taatataaatatttCATCATTACCaaaaacattaattaaattaaatattagttcatgtaa 228344 ||| |||||||| || |||| ||| | |||||| ||| || |||| | || ||| Sbjct 426226 TAAAATAAATATA--ATAATTATTAAATTAAATAATTATATTTAAAATTAAAT-ATTTAA 426282 Query 228345 tataaaaaatactaattttataat-taatttagataatttGAA-AGAATTAGATATATCT 228402 | | ||| || | | |||||| ||||| | |||| | | | ||||| || | | Sbjct 426283 AAAATAAATTAATGTTATTATAAGATAATTAAAATAAATAATATATAATTAATTAAAAAT 426342 Query 228403 AGAAATTTTA--ATATAAATATTTCATCATTACCAAAATCATTAATCAA--ATTAAATAT 228458 | | ||| || |||||| || || | || | ||||| | ||| | ||||| || Sbjct 426343 AAATATTATATAATATAATTAATTTAAAATAATTAAAATAAACAATATATAATTAATTAA 426402 Query 228459 TAGGACATGTTATATAAAAA-ATACTAATTT---TATAATTAATTTAGATAATT-TGAAA 228513 || | || |||||| || | | ||| | ||||||||||| | |||| | | | | Sbjct 426403 -AGTAAATAATATATATAATTAAAGTAAATAATATATAATTAATTAAAATAAATATTATA 426461 Query 228514 GAATTAGATATATCTAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTGATT 228573 ||||| ||| | || | ||| || |||| | | || || ||| |||| ||| | Sbjct 426462 TAATTAAATAAAATTACATATTATA-TATACACAATTAAT--TTA---AAATAATTAAAA 426515 Query 228574 ---ACATTAAATA-TTAATTCATGTTATATAAAACACACTAATTTTA--TAAATGATTTA 228627 ||| || ||| |||||| | || | |||| | | | | | || | ||||| ||| Sbjct 426516 TAAACAATATATAATTAATTAAAGTAA-ATAATATATAATTAATTAAAATAAATA--TTA 426572 Query 228628 TATAATTTGAAGGAATTGGATATATCTAGAAATTA--TAATATAAATATTTCATCATTAC 228685 ||||||| ||| || | |||||| ||||| ||| ||||||||| Sbjct 426573 TATAATTA-AAGTAAATA-ATATAT-----AATTAATTAAAATAAATATT---------- 426615 Query 228686 CAAAATCATTAATCAAATTAAATATTAGTGATTGCGATATTAAAAATACTAATTTTATAA 228745 | || |||||| ||||||||||||| | | | ||| |||||| ||| ||||| Sbjct 426616 --ATATAATTAATTAAATTAAATATTA--TAATACATAATTGAAAATA--AATATTATAT 426669 Query 228746 ATGATTTAGATAATT--TGAAAGAATTAGATATATCTAACAATTA--TAATA-TAAATAT 228800 || ||||| |||||| | ||| ||| | |||| | ||| ||||| ||| | ||||||| Sbjct 426670 AT-ATTTATATAATTAATAAAATAATAATATATTTATAATAATTAATTAAAATTAAATAT 426728 Query 228801 ----TTCATCATTACCAAAAACATTGACTACATTAAATATTAGTTCATGTAATATAA-AA 228855 || || |||| |||| || | |||||| ||| || || || ||| |||| || Sbjct 426729 TATATTTATAATTAATAAAATAAT--AATACATT-TATAATAATTAAT-TAAAATAATAA 426784 Query 228856 AATACtaattttataattaatttagataatttgaaagaattagatatatctaa--aaatt 228913 ||| | || || ||| ||| |||| || ||| ||||| ||||| ||| ||||| Sbjct 426785 TATATTTATAATAAAATATATTATAATAA-TTAAAACAATTA-TTATATTTAATTAAATT 426842 Query 228914 ttaatataaatat 228926 ||||| |||||| Sbjct 426843 ATAATA-AAATAT 426854 >seq6 Length=2590618 Score = 87.8 bits (96), Expect = 3e-12 Identities = 596/904 (66%), Gaps = 119/904 (13%) Strand=Plus/Plus Query 228280 aattataatataaatatttCA-TCATTACCaaaaacattaattaaattaaatattagttc 228338 |||||||||||||||||| | | |||| ||| | |||||||| ||| ||||| Sbjct 1791517 AATTATAATATAAATATTAAAATAATTATTAAATAAGTTAATTAATATAA-TATTAAAAT 1791575 Query 228339 atgtaatataaaaaatactaattttataattaatttagataatt-tGAAAGAATTAGAT- 228396 ||| || || |||| ||||| |||| |||| | |||||| | ||| || | ||| Sbjct 1791576 -TGTTATTAAATAAAT--TAATTATATA--TAATAAA-ATAATTATTAAATAAATTGATT 1791629 Query 228397 ATATCTAG-----AAATTTTAATATAAAT--ATTTCATC-ATTACCAAAATCATTAATCA 228448 |||| || ||||| | | |||||| ||| || | || ||||| | || | | Sbjct 1791630 ATATATAATAATAAAATTATTAAATAAATTGATTATATATAATAATAAAATTAATATTTA 1791689 Query 228449 AATTAAATA--TTAGGACATGTTATA-TAAAAAATACTAATTTTATAATTAATTTAGA-- 228503 ||||||| ||| || | ||| ||||||||| || | |||| |||||| || Sbjct 1791690 --TTAAATAAATTAATTAATATAATAATAAAAAATA-TATTAATATATTTAATTATGAAT 1791746 Query 228504 --TAAT-TTGAAAGAATTAGATAT-----ATCTAGAAATTTTAATATAAATATTTCATCA 228555 |||| || ||| ||||| | || || || || | |||| |||||| | || | Sbjct 1791747 AATAATATTAAAATAATTATAAATTAATTATATATAATTATTAA-ATAAATTAAT-ATAA 1791804 Query 228556 TTACCAAAATCATTGATTACATTAAATATTAATTCATGTTATATAAAACACACTAATTTT 228615 ||| ||| || |||| || |||||||| || |||| ||||| | ||||| | Sbjct 1791805 TTATTAAA----TTAATTATATATAATATTAAAACAA-TTAT-TAAAATTAATTAATTAT 1791858 Query 228616 ATAAATGAT-TTATATAATT-TGAAGGAATTGGATATA-TCTAG-AAATTATAATATAAA 228671 | | | || ||| |||||| | || || | ||||| | || ||| |||| ||| || Sbjct 1791859 A-ATGTAATATTAAATAATTATTAAATAAATTAATATAATATATTAAAATATA-TATTAA 1791916 Query 228672 TATTTCATCATTACCAA-AATCATTAATCAAATTAAATATTAGTGATTGCGATATTAAAA 228730 || | || || | || || || ||| ||| ||||||| | || | || || | Sbjct 1791917 TAGTCTATAATAATGAACAAATATAAATATAAT--AATATTATTAATATAAAAATAAATA 1791974 Query 228731 ATAC---TAAT-TTTAT-AAATGATTTAGATAATTTGAAAGAATTAGA---TATATCTAA 228782 ||| |||| ||||| |||| | ||| |||| ||| |||| | ||||| || Sbjct 1791975 ATAAAATTAATATTTATTAAATAAATTAATTAAT---AAAATATTAAAAAATATATTAAA 1792031 Query 228783 CAATTA--TA-ATATAAATATTTCATCATTACCAAAAACATTGACTACATTAAATA-TTA 228838 ||||| || |||||||||| | |||| | || ||| | || |||||||| ||| Sbjct 1792032 TAATTAATTATATATAAATATAT----ATTAAAATAATTATTAAATAAATTAAATAATTA 1792087 Query 228839 GTTCATGTAATATAAAAAATACtaattttataattaatttagataatttgaaagaattag 228898 || | |||||| ||||| |||| |||||||||| | |||||| |||| Sbjct 1792088 ATTAA---AATATATTAAATATTAAT---ATAATTAATTAAAATAATT-------ATTAA 1792134 Query 228899 atatatctaaa--aatt-ttaatataaatatttCATCATTACCAAAATCATTG----ATT 228951 |||| | || |||| |||||||| ||| | || |||| | || ||| ||| Sbjct 1792135 ATATGTTGAATTTAATTATTAATATATATAAT--ATTATTAAATATATAATTATGATATT 1792192 Query 228952 AC--ATTAAATATTAATTCATGTTATATAAACCATACTAATTTTATAAATGATTTATATA 229009 | |||||||||||||| || |||| ||| ||||| | | || |||||| Sbjct 1792193 AATTATTAAATATTAATT-ATTTTAT------TATATTAATT-----ATTTATATATATA 1792240 Query 229010 ATTTGAAAGAATTAGATA-TATCTAACAATTATAATATAAATATTTCATCATTACCAAAT 229068 || ||| ||| | ||| || ||| | ||||| ||||||| | || | || || | Sbjct 1792241 AT---AAACAATAAAATATTAATTAAAATAAATAAT-TAAATATATTATAAATA--AATT 1792294 Query 229069 ACATTAATTGAATTAAATAT----TAGTTCGTGTTATATAAAAAATACTAATTTTA-TAA 229123 | | ||| | |||||||||| || | | |||| |||||| ||||| || ||| Sbjct 1792295 AAAATAAAT-AATTAAATATATTGTAAATTAATTAATATTTAAAATATTAATTATATTAA 1792353 Query 229124 TTAA 229127 |||| Sbjct 1792354 TTAA 1792357 >seq13 Length=1528798 Score = 84.2 bits (92), Expect = 3e-11 Identities = 634/974 (65%), Gaps = 104/974 (11%) Strand=Plus/Minus Query 228197 aattaaatattagt--aattgtaatataataaatgct-agttctt--taaaaaatttaat 228251 |||||| || |||| || | ||||| ||||||| | | || | ||| |||| ||| Sbjct 1313425 AATTAATTAATAGTTTAAATATAATAAAATAAATAATTAATTAATAATAATAAATAAAAT 1313366 Query 228252 taattta-aaagaattggatatatctaacaattataatataaatatttCATCATTACCaa 228310 |||| || ||| |||| |||| ||| || ||| |||| || || || || | || Sbjct 1313365 TAATATATAAATAATTA-ATATTATTAAATATAATATAATAATTAATTAATAATAAATAA 1313307 Query 228311 aaacattaattaaatta--aatattagttcatgtaatataaaaa--atactaattttata 228366 || || || ||||| | |||||| | || ||||| || || ||| || || ||| Sbjct 1313306 AATCAATATATAAATAATTAATATTGTTAAATATAATAAAATAATTATATAAAATTAATA 1313247 Query 228367 --attaatttagataatttGAAAGAATTAGATATATCTAGAAATTTTAATATAAATATTT 228424 ||||| | | |||||| || |||| ||| || || ||||||| || || | Sbjct 1313246 TTATTAAATAA--TAATTT--AATTATTAATAATAAATAAAA---TTAATATTAA-ATAT 1313195 Query 228425 CATCATTACCAAAATCATTAATCAAATTAAATATTAGGACATGTTATATAAAAAAT-ACT 228483 || |||| ||| ||||| | | |||||| | || ||| ||||| ||| | | Sbjct 1313194 AATAATTA----AATATTTAATAACAATAAATAAAAT---ATATTA-ATAAATAATTAGT 1313143 Query 228484 AATTTTA--TAATTA-ATTTAGATAATTTGAAAGAATTAGATATATCTAGAAATTTTAAT 228540 ||| ||| |||||| | || ||||| || ||| | |||||| |||| | | | Sbjct 1313142 AATATTAAATAATTATAAATATTTAATTAATAATAATAAAATATATT---AAATATAATT 1313086 Query 228541 ATAAATATTTCATCATTACCAAAATCATTGATTACATTAAATATTAATTCATGTTATATA 228600 |||| ||||| || | | ||| || |||| |||| ||||| | ||| ||| Sbjct 1313085 ATAATTATTTAATTAATT----AATAATAAATTATATTA--TATTA-----TATTAAATA 1313037 Query 228601 AAACACACTAATTTTATAAATGATTTATATAATTTGAAGGAATTGGATATATC-TAGAAA 228659 ||| || ||||| |||||| | ||||||| || ||| |||||| || ||| Sbjct 1313036 AAAT-CAATAATT--ATAAATATTAAATATAAT---AATTAATAAAATATATTATATAAA 1312983 Query 228660 TTA----TAAT-ATAAATATT-TCATCATTACCAAAATCATTAATCAAATTAAAT-ATTA 228712 || || | ||||||| | | || |||| | ||| | |||| || |||| | | || Sbjct 1312982 TTCATTTTATTTATAAATAATATTAT-ATTAGTATAATAAATAAT-AATTTAATTTAATA 1312925 Query 228713 GTGATTGCGATATTAAAAATACTAATTTTATAAATGATTTAGATAATTTGAAAGAATTAG 228772 | | | ||||||| | || | ||||||| || | | ||| || ||||| Sbjct 1312924 ATTAATTAAATATTAAGGTT--TATTACTATAAATAGTTAATAAAATAATTAAAAATTAT 1312867 Query 228773 ATATATCTAACA--ATT--ATAATAT---AAATATTTCATCATTACCAAAAACATTGACT 228825 |||| | ||| | ||| ||||||| || ||||| | |||| ||| | ||| | Sbjct 1312866 ATATTTTTAATATAATTTAATAATATTTTAATTATTTACTTATTAAAAAATATATTT--T 1312809 Query 228826 ACATTAA-ATA-TTAGTTCATGTAA---TATAA--AAAATACtaattttataattaattt 228878 | |||| ||| ||| | || ||| ||||| || ||| |||||| || |||| ||| Sbjct 1312808 AAATTATTATAATTAAATTATTTAAATATATAATTAATATATTAATTT-ATTATTA-TTT 1312751 Query 228879 agataatttgaaagaattagatatatctaaaaattttaatataaatatttCATCATTACC 228938 | ||| || || ||||| |||| | |||||| |||| || || ||| Sbjct 1312750 ATATATATTAAATTAATTATTTATAA--------TATAATATTAATAATTAATGTTTATT 1312699 Query 228939 AAAATCATTGAT-TACATTAAATATTAATTCATGTTATATAAACCATACTAATTTTATAA 228997 ||||| || || | ||| |||||||| || ||||||| | ||| ||| || | Sbjct 1312698 AAAATAATATATATTTATTT--TATTAATT-AT-TTATATATA--ATA----TTTAATTA 1312649 Query 228998 ATGATTTATATAATTTGAAAGAATTAGATATATCTAACAATTATAATATAAATATTTCAT 229057 | |||||||||||| ||| ||| ||| | || ||| ||||| ||||| Sbjct 1312648 TTAATTTATATAATTAAAAAATATTTAATAATTATATTTTATATTATATAGATATTAATA 1312589 Query 229058 CATTACCAAATACATTAATTGAATTAAATATTAGTTCGTGTTATATAAAAAATACTAATT 229117 |||| |||| | |||| ||||| |||| | | |||||||||| ||| || | Sbjct 1312588 TATTA-TTAATAATTAAATTTAATTATTTATTTAATATTATTATATAAAATATA-AAACT 1312531 Query 229118 TTATAATTAATTTA 229131 | ||||| ||||| Sbjct 1312530 ATTTAATTTATTTA 1312517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454545747200