Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq11 158 2e-33 seq3 156 6e-33 >seq11 Length=1061054 Score = 158 bits (174), Expect = 2e-33 Identities = 117/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || ||||||||||| |||||||| ||||||||||| || Sbjct 508671 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 508612 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| ||||| |||||| Sbjct 508611 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGA 508552 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 508551 ATTCCTTCTTTATCTTG 508535 Score = 156 bits (172), Expect = 6e-33 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || ||||||||||| |||||||| ||||||||||| || Sbjct 508899 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 508840 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct 508839 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGG 508780 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| |||||| || |||||| Sbjct 508779 ATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 508720 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || ||||| || ||||||||||| | || || ||||| Sbjct 508719 TCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508673 Score = 152 bits (168), Expect = 8e-32 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || ||||||||||| |||||||| ||||||||||| || Sbjct 509127 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 509068 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| || || |||||| Sbjct 509067 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 509008 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| ||||||||||| |||||| || |||||| Sbjct 509007 ATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 508948 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || ||||| || ||||||||||| | || || ||||| Sbjct 508947 TCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508901 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || | |||||| || |||||||| || ||||| || || Sbjct 509355 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGAT 509296 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| ||||||||||| ||||||||||| |||||||| || || |||||| Sbjct 509295 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 509236 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 509235 ATTCCTTCTTTATCTTG 509219 >seq3 Length=1857262 Score = 156 bits (172), Expect = 6e-33 Identities = 180/249 (72%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || |||||||||||| || || ||||| |||||||| || || | ||||||| ||| Sbjct 1608531 TATTACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATC 1608590 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 ||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 1608591 TTCTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATC 1608650 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| ||| || || ||| || || || |||||||| Sbjct 1608651 TTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGT 1608710 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCATTTT----ATTAGAAAAATATTTGTTaa 146300 ||| || ||||||||||| | || ||||||||||| | || ||||||| | | | Sbjct 1608711 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAGTATAAAAATAAT--ATGA 1608768 Query 146301 aaaaaaTAA 146309 ||||||||| Sbjct 1608769 AAAAAATAA 1608777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743524968711680