Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq12 143 4e-29 seq5 91.5 2e-13 >seq12 Length=891477 Score = 143 bits (158), Expect = 4e-29 Identities = 392/595 (66%), Gaps = 34/595 (6%) Strand=Plus/Plus Query 104167 GACGATAGAACAGGAATTGGAACTAAAAATGTATTTGGAGAACAATTAAAATTTAATTTA 104226 || ||||||||||| |||| || | ||||||| | | |||||||||||| Sbjct 690124 GATGATAGAACAGGTGTTGGTGTGTTAAGTAAATTTGGATATATGATGAAATTTAATTTA 690183 Query 104227 AGAACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGAA 104286 | || |||||| ||| |||| ||||||||| | ||| | ||| || | |||||| Sbjct 690184 AATCAATATTTTCCATTATTAACAACAAAAAAATTATTTGTGCGAGGTATTATTGAAGAA 690243 Query 104287 CTCTTATGGTTTATTAGCGGGAGTACAGATGTTTCTGTATTAAATCAAAAAGGAGTTAAA 104346 | ||||||||||| || || ||| ||| | ||| ||||| || | | Sbjct 690244 TTATTATGGTTTATAAGAGGAGAAACAAATGGAAATACATTGTTAGAAAAAAATGTAAGA 690303 Query 104347 ATTTGGAATAAAAATGCA------GAATCGTTTTATACACAACAAAATCTTTT--Taaaa 104398 || ||| | |||| | |||| ||||| | | | ||||| ||| || | Sbjct 690304 ATATGGGAAGCTAATGGAACAAGAGAAT--TTTTAGATAATAGAAAATTATTTCATAGAG 690361 Query 104399 aa---aaTGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGGTGAAAATTATA 104455 || |||||| | || ||||||||||| || || |||||||||| ||||| | |||| Sbjct 690362 AAGTTAATGATCTTGGTCCTATTTATGGATTCCAATGGAGACATTTTGGTGCTGAATATA 690421 Query 104456 TTGGG-TGC--GATAAT---AAATATGGTGGTATAGATCAACTCAAAAATATTATTACAA 104509 | ||| |||||| ||| || ||| | |||||||| ||||||||||| | Sbjct 690422 CAGATATGCATGATAATTATAAAGATAAAGGTGTTGATCAACTAAAAAATATTATAAATT 690481 Query 104510 CAATTCAAAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATA 104569 |||| ||||||| ||| |||| |||| || |||| || ||||| ||| ||| Sbjct 690482 TAATTAAAAATGATCCTACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATT 690541 Query 104570 ATTCTAAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAA 104629 |||||||||| | ||||| |||||| | || || ||| |||| || Sbjct 690542 TAGATAAAATGGCATTACCTCCATGTCATATTTTATGTCAATTTTATGT---TT------ 690592 Query 104630 TAAATGGTAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGG 104689 | ||| || |||| || ||| | | | |||||||||| ||| | || | | Sbjct 690593 TTGATG------GAAAATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGGACTAG 690646 Query 104690 GAGTTCCTTTTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGT 104744 ||||||| |||||||| || |||| | |||| ||| |||| ||||| || || Sbjct 690647 GAGTTCCATTTAACATTGCTTCTTATTCTATATTTACATATATGATAGCACAAGT 690701 >seq5 Length=2795668 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 73930 ATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTC 73989 |||||||||| || | | ||||||||||| |||||||| || || ||| || Sbjct 1892338 ATGGAGATATTGTATTATTTAATAGACAACCCTCTTTACATCGTATGTCTATTATGTGTC 1892279 Query 73990 TTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTTAATCT---TGCATGCACTAAAC 74046 | || || | |||||||| ||||| ||| |||||| || || || | Sbjct 1892278 ATAAAGCTAGAGTTATGGATTATAAAACATTTCGTTTTAATGAATGTGTTTG---TAGCC 1892222 Query 74047 CATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCCTCAATCAGAAGAAA 74106 | ||||||||||||||||||||||||||||||||| |||| |||||| | |||||| Sbjct 1892221 CTTATAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTACCTCAAACTGAAGAAT 1892162 Query 74107 GTAAAGCTGA 74116 || ||| || Sbjct 1892161 CTAGAGCAGA 1892152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679813091357280