Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3 122 7e-23 seq11 111 1e-19 >seq3 Length=1857262 Score = 122 bits (134), Expect = 7e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||||| ||||||||||| || ||||| | | |||| | | |||||| Sbjct 1608534 TACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTC 1608593 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 || ||||| || ||| | || | |||||||||||| || | ||||| ||||| Sbjct 1608594 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 1608653 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| | || || || | | ||| ||||||| || || |||| ||||| ||| Sbjct 1608654 AATTT-TAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTT 1608712 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| |||||||||||||| ||||||||||| Sbjct 1608713 TTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1608746 >seq11 Length=1061054 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || || || | | |||| ||| |||||| |||||||| || Sbjct 508869 GTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 508810 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | |||||||||||| || | ||||| ||||| ||||| | || || Sbjct 508809 GCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTT-TAGCTTT 508751 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || || || |||| || ||| |||| || || ||||| Sbjct 508750 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGT 508691 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||| ||||| Sbjct 508690 TTTTACAAAAATCTGCAT 508673 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||||||||||||||| ||||| | | |||| ||| |||||| |||||||| || Sbjct 509325 GTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 509266 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | ||||||||| || || | ||||| ||||| ||||| | || || Sbjct 509265 GCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAATTT-TAGCTTT 509207 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || || || |||| || || | || || || ||||| Sbjct 509206 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATAGTCTTTCCAGTTAATGT 509147 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||| ||||| Sbjct 509146 TTTTACAAAAATCTGCAT 509129 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || || || | | |||| ||| |||||| |||||||| || Sbjct 509097 GTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 509038 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | ||||||||| || || | || || ||||| |||| | || || Sbjct 509037 GCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGATTT-TAGCTTT 508979 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||| || || || |||| || ||| |||| || || ||||| Sbjct 508978 AACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGT 508919 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||| ||||| Sbjct 508918 TTTTACAAAAATCTGCAT 508901 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || || || | | |||| ||| |||||| |||||||| || Sbjct 508641 GTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCA 508582 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | |||||||||||| || | ||||| ||||| ||||| | || || Sbjct 508581 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTT-TAGCTTT 508523 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTC 18274 || | | ||| ||| ||| ||||| Sbjct 508522 AACATTTTCAATAGTATCAGATGGCTC 508496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343288018730