Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11 446 2e-120 seq2 192 7e-44 >seq11 Length=1061054 Score = 446 bits (494), Expect = 2e-120 Identities = 1125/1694 (66%), Gaps = 30/1694 (2%) Strand=Plus/Minus Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 552988 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 552929 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62302 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 552928 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 552870 Query 62303 TCCACCATCTACCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62361 |||| | | || ||| | | || || || |||| ||| | ||| || | Sbjct 552869 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 552811 Query 62362 AAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421 | || | | | ||| || ||||| || |||||| ||| ||||| | | | | Sbjct 552810 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 552751 Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481 | || ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 552750 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 552691 Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62541 | || ||||||||||| | | | | |||||| | || | | || ||||| | || Sbjct 552690 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 552631 Query 62542 TTAGATGTTCCCAATTCCAAAGATCCGACGGTACA---ACANNNNNNNNNNNATATTGTA 62598 ||| ||||||| |||| | ||| ||| | |||||| Sbjct 552630 TTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTA 552571 Query 62599 GAATACCGTTACTGGCGTACGAT-CCTACATATGTATCATATGGTCCTTCCTTCTCAGCT 62657 || || | ||| || | | | ||| ||||| ||||||||||| | | | ||| Sbjct 552570 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 552512 Query 62658 AGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGA 62717 | || | | | ||||| || | ||||| || |||||||| || | ||||||| Sbjct 552511 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 552452 Query 62718 TCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62777 |||| ||||| ||| ||||||| |||| || ||||| | ||| ||||||||| Sbjct 552451 TCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATCCT 552392 Query 62778 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62837 || || || || || ||||||| |||||| ||||| || ||||||||||| ||| || Sbjct 552391 TGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGG 552332 Query 62838 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTC 62897 |||||||| | || |||||||||| | |||||| ||| | ||| | ||| | Sbjct 552331 TAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATAT 552272 Query 62898 AGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAATGCAACAGAT 62951 | ||| |||||||||| | |||| | |||| || ||||||| || Sbjct 552271 AATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTGAA 552212 Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 |||| |||||| || ||||| |||| || | ||||| ||||| ||| || | | Sbjct 552211 GCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATAAA 552152 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 |||||||| || || ||||||||||||| ||||||| || ||||| ||||| ||| Sbjct 552151 TTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTA 552092 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131 || | || |||| ||||||||| || ||| || || ||| || ||| | || Sbjct 552091 TATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAATCT 552032 Query 63132 CGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGAGTATACAATCGT 63188 | || | | || ||| | || ||||| ||| ||| ||||| ||| | Sbjct 552031 TGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATTTT 551975 Query 63189 TCGAACTCGTCTCCCCAAACATTGTC-CAATCTAGGACATTCATCCGGACACATCAACGA 63247 || || || || |||| || ||| | || | |||||||||| |||||||| | | Sbjct 551974 TCAAATTCTTCACCCC-AAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGTGT 551916 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| | || | || || |||| ||||||||| | |||||| | ||||| ||| ||| Sbjct 551915 CCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAA 551856 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || |||||| | ||| ||| || || || ||| ||| | | ||| | || | | Sbjct 551855 TAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAA 551796 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 ||||||||||||||| ||||| | |||| || | | || | ||| ||| || Sbjct 551795 AATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACC 551736 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||||||| |||||||| || | |||| ||||||| |||||||||| | ||| ||||| Sbjct 551735 TTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGA 551676 Query 63488 TATACCATTGGTACCGGAGATAT-AGCCTCCACTGGCACGAATATTACTAATTGATAGAC 63546 ||||||||| || || |||| || | | | | | |||| | | | | Sbjct 551675 TATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAACTC 551617 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 |||| || || || ||||| ||||| || ||| ||||||| || ||| | || |||| Sbjct 551616 CTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACCTT 551557 Query 63607 CTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 | || ||| |||| | ||| |||||| || |||||||| |||| | ||| Sbjct 551556 CGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTGTT 551498 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || | ||||||||| ||||||| ||| || || || |||| | ||| | || || || Sbjct 551497 CCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGATAT 551438 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 || || | |||| || | ||| | ||| ||||| | || || | |||||| | Sbjct 551437 GTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATAAA 551378 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 || || || | ||||| |||||| ||||| ||| || || || ||| |||| || ||| Sbjct 551377 TGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATGTT 551318 Query 63846 TTAAAACCAAAATA 63859 || || |||||||| Sbjct 551317 TTGAATCCAAAATA 551304 >seq2 Length=1757347 Score = 192 bits (212), Expect = 7e-44 Identities = 611/932 (66%), Gaps = 29/932 (3%) Strand=Plus/Minus Query 33226 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAA--TGATTGTCTTCTT-GAGACATAA 33282 |||| ||| |||||| ||| || ||||||||| | || | ||||| ||| ||||| Sbjct 1514604 TTATATTTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1514545 Query 33283 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33342 | || ||||| || || | || | |||||| || ||||| |||||||||| || | Sbjct 1514544 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1514485 Query 33343 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAA-- 33400 |||| ||||| ||| || || || || || ||| ||| | |||| || Sbjct 1514484 ATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAAC 1514425 Query 33401 -TTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCA 33459 ||| ||| |||||||| || || ||||| |||||| ||| | |||||| Sbjct 1514424 ATTCT--AAT-AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCA 1514368 Query 33460 TTCCTATGAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 |||| || | | | || |||| |||| || |||| | ||| | || || Sbjct 1514367 TTCCAATTAAATCACAAGGTAAAGATTCACA--AATAAATGATCTTTCTACTTCAACTGC 1514310 Query 33518 ATTTGTTATAATAAATCT-----AACGGTTTCT--TCACTCGGTGGATGTAATAAATGTT 33570 | | ||| | || || | ||| ||||| | | | | | ||||||| Sbjct 1514309 TTCT-TTA-ACTATATTTTGAACAACATTTTCTGGTAATTTATTT--TCTAATAAAC--- 1514257 Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630 || | || ||||| ||||| || | |||||| || |||||||||||||| ||| Sbjct 1514256 TATAAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTAC 1514197 Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690 ||| || | || | | | | ||||||| |||||| || | | || || Sbjct 1514196 TAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTC 1514137 Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33750 | ||| || ||||||||||| ||| || | || ||| ||| || || Sbjct 1514136 CACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTG 1514077 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | |||| |||||| || |||||| || || ||||| | | || || |||| | Sbjct 1514076 TATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAA 1514017 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | |||| ||| | || | |||| || |||||||| |||| |||| || || | || Sbjct 1514016 TAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAAC 1513957 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||| |||| ||||| || ||||||| || || ||||| || || | | || | Sbjct 1513956 TATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTT 1513897 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCA 33989 | |||| | |||||| | ||||| | || || |||||||| || ||||||||| Sbjct 1513896 CAATAATTTCTACTTCTCTTAAAAATT-TACTAGCCAAATTTTCTAATACAATTCCATCA 1513838 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 || ||||||||||| || || |||||||||||||||| |||||| | ||| ||| Sbjct 1513837 CTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTT 1513778 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || Sbjct 1513777 TCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCA 1513718 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATA 34141 || ||||| || | |||||| | ||| |||| Sbjct 1513717 GCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1513686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816387601120