Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11 646 0.0 seq2 273 2e-68 >seq11 Length=1061054 Score = 646 bits (716), Expect = 0.0 Identities = 1213/1758 (69%), Gaps = 46/1758 (3%) Strand=Plus/Minus Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCC 36996 ||||| || || | || | ||| || ||||| || | |||| ||||| || ||| Sbjct 552988 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 552929 Query 36997 CAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATC--TAA-ATGTTGAATAGAA 37053 ||||| |||||||| | || ||||| || | | || | || ||| || ||| | | Sbjct 552928 CAAACAGTTTTATACAATTCTTTTAAATCAGCAGGAATTTCACTAATATATTGTACACTT 552869 Query 37054 CCATTATGTAACA--CAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTA 37111 ||||| || | || ||||||| | || || || | || ||| | |||| | | Sbjct 552868 CCATTGTG-AGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 552811 Query 37112 GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTAT 37171 | ||| | |||| || ||||| ||||| || || ||| |||||| | ||| || Sbjct 552810 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 552751 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 | || || || ||||||||||| | || |||||||| | || ||||| || || || | Sbjct 552750 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 552691 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT 37291 | || ||||| ||||||| ||||| |||||| |||||||| || | ||| | |||| Sbjct 552690 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 552631 Query 37292 TTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAAC----CACATATCATATTGT 37347 ||| | || ||||||||| | || | || | |||| || ||||||||| ||||| Sbjct 552630 TTAATAAATCCCAATCCCA-ATATTTATTATCTACTTTTACATTCCACATATCAAATTGT 552572 Query 37348 AGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCT 37407 | || |||| ||| ||||| | | ||||||| ||||| ||||| | |||| ||| Sbjct 552571 AATATCCCTTGACTTGCTGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 552512 Query 37408 AGTTCGCAACTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464 | ||| ||| ||| ||||| || |||||||| |||||||| || ||| | ||||| Sbjct 552511 AATTC--AAC-AGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTT 552455 Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524 ||| ||| ||||| || || ||| ||| | || | ||||| || || || Sbjct 552454 AATTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAAT 552395 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 || || || || || || || |||| |||| | ||||| ||| | | |||| | | | Sbjct 552394 CCTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATT 552335 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATT 37644 || |||||||| | || || ||||||| || |||| || | ||||| ||||| || Sbjct 552334 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAAT-ATC 552276 Query 37645 CTCAACTTGTCGAACAT-AAATACGTTATT------ATTAACAAATTTACTCAACGAAAT 37697 | | || | || || |||| | || || || ||||||||| | || | ||| Sbjct 552275 ATATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAAT 552216 Query 37698 AGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTAC 37756 || | | |||||| ||||| |||||||| || | || ||| || || || || Sbjct 552215 TGAAGCCAAATTACAAACAGCTACTTCATCAG-GTGATGTATATTCAATTATTTCACAAC 552157 Query 37757 AGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAAT 37816 | | |||||| || |||||||||| ||||| ||||||| ||||| |||||| | || Sbjct 552156 ATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCAT 552097 Query 37817 CTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATA 37876 ||||||||| ||||| || || |||||||||| | | ||||| ||||| Sbjct 552096 CTTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATA 552037 Query 37877 AACTTCTTGCTTTAACGATCGCTTTAAttt------ttttCTTTGTTTCGTATTCTATAT 37930 || ||||| | | || | ||| ||| ||||||| ||| |||| | ||| Sbjct 552036 AA--TCTTG--TGCAAGAACAGTTTTTTTTCCTAAATTTTCTTC--TTCATATTTTGTAT 551983 Query 37931 ATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACA 37990 ||||||| | ||| || | ||||| || | ||| ||||||||||| ||||||| Sbjct 551982 ATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACA 551923 Query 37991 TTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATG 38050 |||| | ||| | | || || || ||| | || ||||||||||||||||||||| | | Sbjct 551922 TTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAG 551863 Query 38051 CAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAA 38110 || |||||||||| | | ||| ||||||| || || ||| |||||||| || || Sbjct 551862 CATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAA 551803 Query 38111 AATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTAT 38170 | || || ||||||| ||||||||||||||||| | | | | ||| |||||| Sbjct 551802 ATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTC 551743 Query 38171 CACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATAC 38230 | || || |||| | ||||||| |||| | |||| | | ||||||||| || |||| || Sbjct 551742 CTCCACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAAC 551683 Query 38231 CATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCG 38290 |||| ||| | || || | || ||||||| | || ||| ||||| ||| | Sbjct 551682 CATTTGATATACCATTAGTTCCTCTAATATAAGAATTCTGTCCTCTTATAT--CTTGTAC 551625 Query 38291 A-CAA-TCCTATTCCACCTGCATGTTTTGATA-TTAAAGCGCATTGTTTTAACGTATCAA 38347 | ||| |||||| || || || ||||| || ||||||| ||||||||||| || |||| Sbjct 551624 AGCAACTCCTATACCTCCCGCG-GTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAA 551566 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 |||||||||| ||| || || || | || || ||| ||| |||||||| || Sbjct 551565 ATATACCTTCGATAGAATCTGATTTCATAGATAATAGAAAGCAAGATGACATTTGTGGAC 551506 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 ||| ||||| | |||||||||||||||| |||||| |||| |||| | |||| Sbjct 551505 GTGGTGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTA 551446 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 ||| ||||||||||| | | || | |||| | || || || | ||||| |||| Sbjct 551445 AATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCA 551386 Query 38528 TTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTT 38587 ||| | ||||||||| | ||| || |||||||| || | | || ||| ||| ||| Sbjct 551385 TTAATAAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTT 551326 Query 38588 CTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATGCTATTACATTAT 38647 |||||||||| | |||||||||| ||| | ||||||| || ||||| | |||| Sbjct 551325 CTAATGTTTTGAATCCAAAATAATCATAGTTAAAATCTCTTGTATAATCTATTTCTTTAT 551266 Query 38648 CGATTATATCTCTATGTT 38665 | |||| |||||| Sbjct 551265 TTAAACGATCTTTATGTT 551248 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||||||| ||||| |||| || | ||| | || ||||| | ||||| ||| ||| Sbjct 553311 TCAACTGTAAATTTAATAGCATCCGTTGCTGCTTGAGTTCTTAAGTAATATGCTCCGGTT 553252 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| ||| | ||| || |||||||||||||||| | ||||||| ||||||| || Sbjct 553251 TTTAGGCCCTTTTCCCAACCATAAAAATGCATACTGGATAATTTTGCGAATGTAGGCTTT 553192 Query 36910 TCTATATATATTGTCATTGATTG 36932 | ||| || || | | |||||| Sbjct 553191 TGTATGTAAATGTTTAGTGATTG 553169 >seq2 Length=1757347 Score = 273 bits (302), Expect = 2e-68 Identities = 631/931 (68%), Gaps = 26/931 (3%) Strand=Plus/Minus Query 11281 TTAAAAATCTATATCCGTAGAAAATA--TATTCTCTTCTTTATTTGTAAACACCCCCATC 11338 ||||||||| ||| |||||||| | |||| |||||| |||||| | Sbjct 1514594 TTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGA--C 1514537 Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || ||||| | ||| || ||||| || || |||| || ||||| | Sbjct 1514536 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1514477 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGA-CTTTTTCACAACCTAACTCTGTTAA 11457 ||||| | | ||||| || | || | |||| | |||| ||| ||||| | ||| Sbjct 1514476 TCCATCCAATTGAAAGGGTTTT-TAGAATGAAAAACTTTAGAACATCCTAAACATTCTAA 1514418 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 ||||||||| || || ||||| ||||| |||||||| | | ||||||| || || | Sbjct 1514417 TAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAA 1514358 Query 11518 ATCCACCGGAATAGCAACTGTCAAA-AACTCCT-TTTCTATATTAACCGCATCAATGATT 11575 ||| || | || | | |||| || | | |||||| | ||| || || | | | Sbjct 1514357 ATCACAAGGTAAAG--ATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 1514300 Query 11576 ATCGACGTT--ATAACTTCCTTAGATGGTGGATGT---AATAAATGTTTAAACATTAAAC 11630 || | || | ||| | | | | | || | |||||| || | ||||||| Sbjct 1514299 AT--ATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAAC---TATAAATTAAAC 1514245 Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690 | ||||||| ||||||||| || || ||||| |||| ||||||| ||||||||| | Sbjct 1514244 AGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAAC 1514185 Query 11691 CGGGCA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 | | | | || | ||||||| | |||||| || ||| ||| ||| ||| ||| Sbjct 1514184 CATGTAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAAT 1514126 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATAT 11808 ||||| || ||| |||| ||||| | ||||||| || | | |||| | | ||| Sbjct 1514125 ATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTATC-ATTTAT 1514067 Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 |||||| ||||| ||||| ||||| | | || |||| ||||| | ||| Sbjct 1514066 CCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAA 1514007 Query 11869 TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTC 11928 ||||| | | ||||| | | |||| | | ||| |||| |||||||||||||| |||| Sbjct 1514006 TAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTC 1513947 Query 11929 TGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTG 11988 ||||| |||||||| | |||||||||||| ||| || | ||| || | | Sbjct 1513946 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTC 1513887 Query 11989 TACATCCACATAAAATCTTTCC-GCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047 ||| || | ||||| || | || ||||| || |||||| |||||||| | ||||| Sbjct 1513886 TACTTCT-CTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAA 1513828 Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCAT 12107 ||||||||| | |||||||||||| | |||||| | | ||||||| || |||| | Sbjct 1513827 AAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCAAAATCTT 1513768 Query 12108 CTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 ||||| | |||||||| | ||||||| | |||||||| || | | || ||| | Sbjct 1513767 TCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGT 1513708 Query 12168 ACATTTTCCAGATATCATGATACTTAATAGG 12198 | | ||||| | ||| ||||| ||||||| Sbjct 1513707 AAAAATTCCAAACTTCAGGATACATAATAGG 1513677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523898089760