Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11 448 6e-121 seq2 219 6e-52 >seq11 Length=1061054 Score = 448 bits (496), Expect = 6e-121 Identities = 1127/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Minus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 552988 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 552929 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 65095 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 552928 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 552870 Query 65096 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 65154 |||| | || || ||| | | || || || |||| ||| | ||| || | Sbjct 552869 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 552811 Query 65155 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214 | || | | | ||| |||||||| || ||||| ||| ||||| | | | | Sbjct 552810 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 552751 Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274 | || ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 552750 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 552691 Query 65275 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 65334 | || ||||||||||| | | | | |||||| | || | | || ||||| | || Sbjct 552690 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 552631 Query 65335 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTA 65391 ||| ||||||| |||| | ||| || ||||| Sbjct 552630 TTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTA 552571 Query 65392 GAATACCGTTACTGGCGTACGAT-CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 65450 || || | ||| || | | | ||| ||||| || |||||||| | | | ||| Sbjct 552570 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 552512 Query 65451 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 65510 | |||| | | ||||| || | ||||| || ||||| || || | ||||||| Sbjct 552511 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 552452 Query 65511 TCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 65568 |||| ||||| ||| | || ||||||| |||| || ||||| | ||||||||||| Sbjct 552451 TCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATC 552394 Query 65569 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 65628 |||| || || || || ||||||| |||||| ||||| || ||||||||||| ||| | Sbjct 552393 CTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTG 552334 Query 65629 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 65688 | |||||||| | || |||||||||| | |||||| ||| | ||| | ||| | Sbjct 552333 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCAT 552274 Query 65689 TCAGTTTGAGAAAATCAAA-----TCGCTCATCTAT-TACAAACATGTTCAATGCAACAG 65742 | ||| ||||||||| | | ||||| ||||| || ||||||| | Sbjct 552273 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 552214 Query 65743 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 65802 | |||| ||||||||| ||||| |||| || | ||||| ||||| ||| || | Sbjct 552213 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 552154 Query 65803 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 65862 ||||||||| || || ||||||||||||| ||||||| || ||||| ||||| | Sbjct 552153 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 552094 Query 65863 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 65922 |||| | || |||| ||||||||| || ||| || || ||| || ||| | Sbjct 552093 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 552034 Query 65923 CTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATC 65979 || | || | | || ||| | || |||||| ||| ||| |||||| ||| Sbjct 552033 CTTGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATT 551977 Query 65980 GTTCGAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAAC 66038 ||| || || || |||| || ||| | || || |||||||||| |||||||| | Sbjct 551976 TTTCAAATTCTTCACCCC-AAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGT 551918 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 | ||| | || | || || |||| ||||||||| | |||||| | ||||| ||| | Sbjct 551917 GTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 551858 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 ||||||||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 551857 AATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 551798 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | ||||||| ||||||| ||||| | |||| || | | || | ||| ||| Sbjct 551797 AAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 551738 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 || ||||||| |||||||| || | |||| ||||||| |||||||||| | |||||| Sbjct 551737 CCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 551678 Query 66279 GATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTTGCACGAATATTACTAATTGATAG 66337 ||| ||||||| || || |||| || | | | | | |||| | | | Sbjct 551677 GATATACCATTAGTTCCTCTAATATAAGAATTC-TGTCCTCTTATATCTTGTACAGCAAC 551619 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 ||||| || || || ||||| ||||| || ||| ||||||| || ||| | || || Sbjct 551618 TCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACC 551559 Query 66398 CTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 66456 || ||| ||| |||| | ||| |||||| || |||||||| |||| | Sbjct 551558 TTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTG 551500 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 |||| | ||||||||| ||||||| ||| || || || |||| | ||| | || || | Sbjct 551499 TTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGAT 551440 Query 66517 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 66576 | || || | |||| || | ||| | ||| ||||| | || || | |||||| | Sbjct 551439 ATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATA 551380 Query 66577 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 66636 || || || | ||||| || || ||||| ||| || || || ||| |||| || | Sbjct 551379 AATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATG 551320 Query 66637 TTTTAAAACCAAAATA 66652 |||| || |||||||| Sbjct 551319 TTTTGAATCCAAAATA 551304 >seq2 Length=1757347 Score = 219 bits (242), Expect = 6e-52 Identities = 617/932 (66%), Gaps = 29/932 (3%) Strand=Plus/Minus Query 35802 TTATGTTTCTTTAAAAATCAACATCTAGAGAAAAA--TGATTGTCTTCTT-GAGACATAA 35858 |||| ||| |||||||||| || || |||||| | || | ||||| ||| ||||| Sbjct 1514604 TTATATTTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1514545 Query 35859 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 35918 | || ||||| || || | || | |||||| || ||||| ||||| |||| ||| | Sbjct 1514544 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1514485 Query 35919 ATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAA-- 35976 |||| ||||| ||| ||| || || || || | ||| ||| | |||| || Sbjct 1514484 ATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAAC 1514425 Query 35977 -TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 36035 ||| ||| |||||||| || |||||||| |||||| ||| | |||||| Sbjct 1514424 ATTCT--AAT-AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCA 1514368 Query 36036 TTCCTATAAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 36093 |||| || | | | || |||| |||| || |||| | ||| | || || Sbjct 1514367 TTCCAATTAAATCACAAGGTAAAGATTCACA--AATAAATGATCTTTCTACTTCAACTGC 1514310 Query 36094 GTCTGTTATAATAGATATT-----ACTGTTTCT--TCACTCGGTGGATACAATAAATGTT 36146 ||| ||| | || || || || ||||| | | | | || ||||| Sbjct 1514309 TTCT-TTA-ACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTA--ATAAAC--- 1514257 Query 36147 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 36206 || | || ||||| ||||| |||| |||||| || |||||||||||||| || Sbjct 1514256 TATAAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTAC 1514197 Query 36207 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 36266 ||| || | || | | | | ||||||| |||||| || | ||| || Sbjct 1514196 TAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTC 1514137 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326 || ||| || ||||||||||| ||| || | || ||| ||| || || Sbjct 1514136 CACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTG 1514077 Query 36327 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 | |||| |||||| || |||||| || || ||||| | | || || | || | Sbjct 1514076 TATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAA 1514017 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 |||||| ||| | || | |||| || |||||||| ||| ||||||| || | || Sbjct 1514016 TAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAAC 1513957 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 |||| |||| ||||| || ||||||| || |||||||| || || | | || | Sbjct 1513956 TATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTT 1513897 Query 36507 CGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCA 36565 | |||| | ||||||| | ||||| | || || |||||||| || ||||| ||| Sbjct 1513896 CAATAATTTCTACTTCTCTTAAAAATT-TACTAGCCAAATTTTCTAATACAATTCCATCA 1513838 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 || ||||||||||| || || |||||||||||||||| |||||| || ||| ||| Sbjct 1513837 CTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTT 1513778 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || Sbjct 1513777 TCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCA 1513718 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATA 36717 || ||||| || | |||||| | ||| |||| Sbjct 1513717 GCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1513686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171533017360