Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11 533 2e-146 seq2 203 5e-47 >seq11 Length=1061054 Score = 533 bits (590), Expect = 2e-146 Identities = 1152/1697 (68%), Gaps = 36/1697 (2%) Strand=Plus/Minus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 552988 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 552929 Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 78974 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 552928 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 552870 Query 78975 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 79033 |||| | || || ||| | | || || ||||||| ||| | ||| || | Sbjct 552869 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 552811 Query 79034 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 79093 | || | | | ||| |||||||| || ||||| ||| ||||| | | | | Sbjct 552810 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 552751 Query 79094 AAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATG 79153 | || ||||| ||||||||||| | ||||||||||||||||||||||| | |||||| | Sbjct 552750 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 552691 Query 79154 CCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG-AT-CTGATTTTATC 79211 | |||||||||||||| | | | | |||||| | || ||| || || ||||| | Sbjct 552690 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCC--ATGCATACTTATTTTTTT 552633 Query 79212 TTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACA---ACATTCCAAAGATCATATTG 79268 ||||| | |||||||||||| | | || |||||||| | |||| |||| Sbjct 552632 TTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTG 552573 Query 79269 TAGAATACCGTTACTAGCGTATGAT-CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGG 79327 || || || | ||| || | | | ||| | |||| |||||| ||||| | ||| | Sbjct 552572 TAATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTG 552514 Query 79328 CTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA 79387 |||||||| | | ||||| ||| | ||||| || ||||| || || | ||||| | Sbjct 552513 CTAATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTA 552454 Query 79388 GATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 79446 |||| ||||| | | | ||| ||||||| |||| || ||||| | |||||||||| Sbjct 552453 ATTCTTTAGCTTCATCAGAT-TCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAAT 552395 Query 79447 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATA 79506 ||||| || || || || ||||||| |||||| ||||| || ||||||||||| ||| Sbjct 552394 CCTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATT 552335 Query 79507 GGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGA-CCACATC 79565 || |||||||| | || |||||||||| | ||| || | || || ||| | | ||| Sbjct 552334 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATC 552276 Query 79566 CTTTAGTTTGAGAAAATCAAA-----TCGTCCATCTAT-TACAAACATGTTCAACGCGAC 79619 | || ||| ||||||||| | | ||||| ||||| || || || | Sbjct 552275 ATATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAAT 552216 Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 || |||| ||||||||| ||||| |||| || | ||||| ||||||||| || Sbjct 552215 TGAAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACA 552156 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 | |||||||| ||||| ||||||||||||| ||||||| || ||||| ||||| Sbjct 552155 TAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATC 552096 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||||| | || | || ||||||||| || ||| || || ||| || ||| | Sbjct 552095 TTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAA 552036 Query 79800 GACTCGAGCCTTTATTATAGACTTGTATC---TCTTTTCTCTTTCGTATTGTGTATATAA 79856 || | || | | || || | || |||||| ||| |||| ||||||||| Sbjct 552035 ATCTTGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAA 551979 Query 79857 TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAA 79916 | ||| || || || |||||| || ||| || |||||||| | ||||||||| | Sbjct 551978 TTTTTCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACATTAG 551919 Query 79917 CGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976 | ||| | || || || ||||||| ||||||||| | |||||| | ||||| ||| Sbjct 551918 TGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 551859 Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 ||||| |||||| | ||| || || || || ||| ||| | | ||| | || | Sbjct 551858 AAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 551799 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | ||||||||||||||| ||||| | |||| || | | || || ||| ||| Sbjct 551798 AAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCC 551739 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 || ||||||| |||||||| || | |||| ||||||| |||||||||| | |||||| Sbjct 551738 ACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATT 551679 Query 80157 GGATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATA 80215 ||| ||||||| || || |||| || | | | | | |||| | | | Sbjct 551678 TGATATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAA 551620 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 ||||| || || || ||||| ||||| || ||| ||||||| || ||| | || | Sbjct 551619 CTCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATAC 551560 Query 80276 CCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 | || || ||| |||| | ||| |||||| || |||||||| |||| Sbjct 551559 CTTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGT 551501 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | ||||||||| ||||||| ||| || || || |||| | ||||| || || Sbjct 551500 GTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGA 551441 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || || | |||| ||| | ||| | ||| ||||| | | || | |||||| Sbjct 551440 TATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAAT 551381 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 | || || || | ||||| || || || || ||| || || || ||| |||| || Sbjct 551380 AAATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAAT 551321 Query 80515 GTTTTAAAACCAAAATA 80531 ||||| || |||||||| Sbjct 551320 GTTTTGAATCCAAAATA 551304 >seq2 Length=1757347 Score = 203 bits (224), Expect = 5e-47 Identities = 611/930 (66%), Gaps = 25/930 (3%) Strand=Plus/Minus Query 49604 TTATGTTTCTTTAAAAGTCAACATCTAGAGAAAAA--TGATTATCTTCTT-GAGACATAA 49660 |||| ||| |||||| ||| || || |||||| | || | ||||| ||| ||||| Sbjct 1514604 TTATATTTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1514545 Query 49661 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 49720 | || ||||| || || | || | |||||| || ||||| |||||||||| || | Sbjct 1514544 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1514485 Query 49721 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-- 49778 |||| ||||| ||| || || || || || | ||| ||| | |||| || Sbjct 1514484 ATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAAC 1514425 Query 49779 -TTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 49837 ||| ||| |||||||| || |||||||| |||||| ||| | |||||| Sbjct 1514424 ATTCT--AAT-AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCA 1514368 Query 49838 TTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCAT 49897 |||| || | | | || | || || || |||| | ||| | || || | Sbjct 1514367 TTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTT 1514308 Query 49898 CTGTTATAATA----GATCTAACGGTTTCT--TCACTCGGTGGATGCAATAAATGTTTAA 49951 || | | ||| || | ||| ||||| | | | | | |||||| || Sbjct 1514307 CTTTAACTATATTTTGAAC-AACATTTTCTGGTAATTTATTTTCT--AATAAAC---TAT 1514254 Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 | || ||||| ||||| || | |||||| || |||||||||| ||| || || Sbjct 1514253 AAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAA 1514194 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC--CC 50069 | || | || | | | | ||||||| |||||| || | | |||| || || Sbjct 1514193 ATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTG-CACAAAA-ACTTCC 1514136 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT 50129 | ||| || ||||||||||| ||| || |||| ||| ||| || || | Sbjct 1514135 ACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGT 1514076 Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 |||| |||||| || |||||| || || ||||| | | || || |||| || Sbjct 1514075 ATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAAT 1514016 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 |||| ||| | || | |||| || |||||||| |||| |||| || || | ||| Sbjct 1514015 AGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACT 1513956 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||| |||| ||||| || ||||||| || || ||||| || || | | || || Sbjct 1513955 ATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTC 1513896 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 |||| | |||||| | ||||| ||| |||||||| || ||||| ||||| Sbjct 1513895 AATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACT 1513836 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429 ||||||||||| || || ||||||||||||||||||||||| ||| ||| ||| | Sbjct 1513835 TGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTC 1513776 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || || Sbjct 1513775 AAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGC 1513716 Query 50490 CTTTTTATACATATTCCAGATGTCATGATA 50519 ||||| || | |||||| | ||| |||| Sbjct 1513715 TTTTTTGTAAAAATTCCAAACTTCAGGATA 1513686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267417332560