Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 271 7e-68 >seq2 Length=1757347 Score = 271 bits (300), Expect = 7e-68 Identities = 611/903 (68%), Gaps = 29/903 (3%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| || ||| ||||| || | || | | | | || ||||| || ||| Sbjct 1514593 TAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTT 1514534 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||||||||||||||||| || ||||| |||| | ||||| ||| Sbjct 1514533 TGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCC 1514474 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 13700 || ||| || || ||| | || ||| |||||| ||| |||| |||||||| Sbjct 1514473 ATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAACATTCTAATA-- 1514416 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760 |||||||||||| ||| ||||||||||||||||| | ||||||| || |||| Sbjct 1514415 -ATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAAA 1514357 Query 13761 TTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | ||| | | ||| || |||| | |||||| || || ||||| | || Sbjct 1514356 TCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1514298 Query 13820 AATTGTAATAATCTCATTAGAAGG-AGGATATTTTAGATGTT--TAAAAATTAAACACGC 13876 | || || || |||| || | |||||| | || |||||||||| Sbjct 1514297 ATTTTGAACAA---CATTTTCTGGTAATTTATTTTCTAATAAACTATAAATTAAACAGTT 1514241 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TG 13935 ||||||| ||| | |||||||| |||||||| | ||| || ||||||||| || || Sbjct 1514240 AAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATG 1514181 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTC 13995 || || | ||||||| |||||||| |||||| ||| || ||| ||||||| Sbjct 1514180 TAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTC 1514122 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 | || || ||| |||| | || |||| |||| || | | | || ||||| Sbjct 1514121 CTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTATCATT---TATCC 1514065 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 |||| ||||||| | ||| ||||| ||| || |||||||||||| ||||| Sbjct 1514064 ATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATA 1514005 Query 14116 AA--TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14173 || || || |||| ||| | ||| ||| || ||||||| | ||| ||||| |||| Sbjct 1514004 AATTTAATCTTTCTTTTTCAT-CTT-TAATATAATTATCAATTAATAAACTATATGTTTC 1513947 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTG 14233 ||| ||||| ||||| | |||||| |||||| |||||| | | ||||| || Sbjct 1513946 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTC 1513887 Query 14234 TACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14293 |||||| ||||| | ||||||||||| || || |||||||| |||||||| Sbjct 1513886 TACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAA 1513827 Query 14294 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAGTTTTTTCCAATC 14350 |||||| || | | ||| |||| | || | ||||||| || | ||||| |||| Sbjct 1513826 AAATGCTAAAACATGTTTTATAA---AATGTTTTTCATTGACATTTAATTTTTCAAAATC 1513770 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 ||||| | || | ||| | ||| ||| |||||||||| ||| |||||||||| Sbjct 1513769 TTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTT 1513710 Query 14411 ATA 14413 || Sbjct 1513709 GTA 1513707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727076523600