Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 502 3e-137 seq2 190 3e-43 >seq11 Length=1061054 Score = 502 bits (556), Expect = 3e-137 Identities = 1137/1693 (67%), Gaps = 28/1693 (2%) Strand=Plus/Minus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 552988 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 552929 Query 71002 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 71057 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 552928 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 552870 Query 71058 TCCACCATCTGCAAT-AATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 71116 |||| | ||||| ||| | | ||| || ||||||| ||| | ||| || | Sbjct 552869 TCCATTGTGAGCAATCAATTGT-TGTTTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 552811 Query 71117 AAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGT 71176 | || | | | |||||||||||| || ||||| ||| ||||| | | | | Sbjct 552810 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 552751 Query 71177 AAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 71236 | || ||||| ||||| ||||| | ||| |||||||||||||||||||| | |||||| | Sbjct 552750 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 552691 Query 71237 CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTT 71296 | || ||||||||||| | | ||| |||||| | ||||| | ||||| | || Sbjct 552690 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 552631 Query 71297 TTAGAGATTCCCAATTCCAA-AGATCCGATGGTACA---ACNNNNNNNNNNNNNNNNNNN 71352 ||| | ||||||| |||| | | || ||| || Sbjct 552630 TTAATAAATCCCAATCCCAATATTTATTATC-TACTTTTACATTCCACATATCAAATTGT 552572 Query 71353 NNNATGCCGTTACTAGCGTATGAT-CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGC 71411 || || | ||| || | | | ||| ||||| || |||||||| | | ||| || Sbjct 552571 AATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGC 552513 Query 71412 TAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAG 71471 || |||| | | ||||| ||| ||||||| || ||||| || || | ||||| | Sbjct 552512 TAATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAA 552453 Query 71472 ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 71531 |||| ||||| ||| ||||||| |||| || ||||| | |||||||||||| Sbjct 552452 TTCTTTAGCTTCATCAGATTCATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATCC 552393 Query 71532 TTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGG 71591 ||| || || || || ||||||| ||||| ||||| || ||||||||||| ||| || Sbjct 552392 TTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGG 552333 Query 71592 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGA-CCACATCCT 71650 |||||||| | || |||||||||| | |||||| | || || ||| | | ||| | Sbjct 552332 GTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCAT 552274 Query 71651 TTAGTTTGAGAAAATCAAA-----TCTCCCATCTAT-TACAAACACGTTCAAGGCAACAG 71704 || ||| ||||||||| | | ||||| ||||| | || |||| | Sbjct 552273 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 552214 Query 71705 ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAA 71764 | |||| ||||||||| ||||| |||| || | ||||| || |||||| || | Sbjct 552213 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 552154 Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824 ||||||||| || || ||||||||||||| ||||||| || ||||| ||||| | Sbjct 552153 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 552094 Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 71884 |||| | ||| | || ||||||||| || ||| || || ||| || ||| | Sbjct 552093 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 552034 Query 71885 CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 || | || | | || || | |||||| ||| |||| |||||||||| || Sbjct 552033 CTTGTGCAAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATTTTT 551974 Query 71945 CGAACTCGTCTCCCCAAGCATTGTC-TAATCCAGGACATTCATTCGGACACATCAATGAC 72003 | || || || ||||||| ||| | ||| || ||||||||||| |||||||| | || | Sbjct 551973 CAAATTCTTCACCCCAAG-ATTCACTTAACCCTGGACATTCATTAGGACACATTAGTGTC 551915 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || | || || || ||||||| ||||||||| | |||||| | ||||| ||| |||| Sbjct 551914 CAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAAT 551855 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 | |||||| | ||| || || || || ||| ||| | | ||| | || | | | Sbjct 551854 AAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAA 551795 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 |||||||||||||| ||||| | |||| || | | || | ||| ||| || Sbjct 551794 ATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCT 551735 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||||| |||||||| || | |||| ||||||| |||||||||| | |||||| ||| Sbjct 551734 TGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGAT 551675 Query 72244 GCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTGCTAATTGATAGACC 72302 |||||| || || |||| || | | | | | |||| | | | || Sbjct 551674 ATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAACTCC 551616 Query 72303 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 72362 ||| || || || ||||| ||||| || ||| ||||||| || ||| | || || || Sbjct 551615 TATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACCTTC 551556 Query 72363 TATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 ||| ||| |||| | ||| |||||| || |||||||| |||| |||| Sbjct 551555 GATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTGTTC 551497 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | | ||||||||| ||||||| ||| || || || |||| | ||||| || || || | Sbjct 551496 CTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGATATG 551437 Query 72482 TCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 | || | |||| ||| | ||| | ||||||||| | | || | |||||| | || Sbjct 551436 TTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATAAAT 551377 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 | || || | ||||| || || || || ||| || || || ||| |||| || |||| Sbjct 551376 GTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATGTTT 551317 Query 72602 TAAAACCAAAATA 72614 | || |||||||| Sbjct 551316 TGAATCCAAAATA 551304 >seq2 Length=1757347 Score = 190 bits (210), Expect = 3e-43 Identities = 366/540 (68%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 42085 ACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTT 42144 ||||||||| |||||||||||||| || ||| || | || | | | | || Sbjct 1514225 ACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTAATTTATTTTGTTT 1514166 Query 42145 TTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAA 42204 ||||| |||||| || | ||| |||| ||| || ||||||||||| ||| Sbjct 1514165 TTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATTCCTTCTACACATGCATT 1514106 Query 42205 GGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGC 42264 || | || ||| ||| || || | |||| |||||| || |||||| || Sbjct 1514105 AGCTACAATTCTTTCTGCAAAAGAATTTGTATCATTTATCCATTTAGCAGCCCATAATGC 1514046 Query 42265 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 42324 || ||||| | | || || |||| || |||| ||| | || | |||| || Sbjct 1514045 TTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTTTCTTTTTC 1513986 Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||| |||| || || | |||||| |||| ||||| || ||||||| || Sbjct 1513985 ATCTTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGTATATTTTCAACAGC 1513926 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || ||||| || || | | || || ||| | ||||||| | ||||| Sbjct 1513925 TATTTGAAAAGAATAAAATTTTTTTGCTTCAATAATTTCTACTTCTCTTAAAAATTTACT 1513866 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 ||| |||||||| || ||||| ||||| ||||||||||| || || ||||||||||| Sbjct 1513865 AGCCAAATTTTCTAATACAATTCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTAT 1513806 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTAC 42564 ||||| |||||| | ||||||| | |||| || | ||| | |||| ||| | Sbjct 1513805 AAAATGTTTTTCATTGACATTTAATTTTTCAAAATCTTTCAAATCGCTCGATAAATCAAT 1513746 Query 42565 TTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATA 42624 |||||| | ||||||||||| ||||| || ||||| || | |||||| | ||| |||| Sbjct 1513745 TTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1513686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137908057040