Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq11 154 1e-32 seq3 105 5e-18 >seq11 Length=1061054 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| | || || |||||||| || || ||||| | Sbjct 508899 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 508840 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||||||||| ||||| | || || | |||||| || || Sbjct 508839 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGG 508780 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || |||||| ||| || ||| |||| || |||||| |||||| Sbjct 508779 ATTCCTTCTTTATCTTGAATTTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCTAC 508721 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || |||||||| || || | |||||||||||||| |||||| Sbjct 508720 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 508672 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| | || || |||||||| || || ||||| | Sbjct 509127 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 509068 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||||||||| ||||| | || || | ||||||||| ||| Sbjct 509067 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 509008 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| ||||| || ||||| ||| || ||| |||| || |||||| |||||| Sbjct 509007 ATTCCCTCTTTATCTTGGATTTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCTAC 508949 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || |||||||| || || | |||||||||||||| |||||| Sbjct 508948 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 508900 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||| ||| | ||| || |||||||| ||||| || || | Sbjct 509355 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGAT 509296 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||||||||| ||||| | || || | ||||||||| ||| Sbjct 509295 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 509236 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || |||||| ||| || ||| |||| || |||||| |||||| Sbjct 509235 ATTCCTTCTTTATCTTGAATTTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCTAC 509177 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || || || || || || | |||||||||||||| |||||| Sbjct 509176 ATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 509128 Score = 120 bits (132), Expect = 2e-22 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| | || || |||||||| || || ||||| | Sbjct 508671 CCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGAT 508612 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||||||||| ||||| | || || | |||||| || ||| Sbjct 508611 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGA 508552 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || |||||| ||| || ||| |||| || ||||| ||||| Sbjct 508551 ATTCCTTCTTTATCTTGAATTTTAGCT-TTAACATTTTCAATAGTATCAGATGGCTCTAC 508493 Query 15316 ATCTAAGGTAATGGTTTTACCTG 15338 ||| | || || ||||| |||| Sbjct 508492 ATCAAGAGTTATAGTTTTTCCTG 508470 >seq3 Length=1857262 Score = 105 bits (116), Expect = 5e-18 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||| || |||||||| || || || || || |||| | |||||| Sbjct 1608535 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCT 1608594 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||| ||||| | || || | |||||| || |||||||||||||| || | Sbjct 1608595 AACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 1608654 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || || || ||| ||||| | || || ||||| Sbjct 1608655 ATTTTAGCT-TTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1608713 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA--ATAAAA 15377 || || | ||||||||||| |||||||| || | || |||||| Sbjct 1608714 TCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAGTATAAAA 1608759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178520234914