Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11 242 9e-59 seq3 199 9e-46 seq2 129 1e-24 >seq11 Length=1061054 Score = 242 bits (268), Expect = 9e-59 Identities = 190/227 (84%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | ||||||||||| || |||||||| ||||| |||||||||||| Sbjct 509355 CCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGAT 509296 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||||||| ||||||| |||||| ||||||||||||| || ||||| |||||||| Sbjct 509295 AGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGA 509236 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||||||||| ||||| || ||||| |||||||| | |||||| |||||||| Sbjct 509235 ATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACA 509176 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| ||||| | |||||||||||| |||||||| Sbjct 509175 TCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 509129 Score = 235 bits (260), Expect = 1e-56 Identities = 190/230 (83%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||| || |||||||| ||||||||||| ||| Sbjct 508902 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 508843 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||| ||||||| |||||| ||||||||||||| || |||||||||||| Sbjct 508842 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 508783 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| || ||||| |||||||| | |||||| |||||| Sbjct 508782 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 508723 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || ||||| | |||||||||||| |||||||| Sbjct 508722 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508673 Score = 221 bits (244), Expect = 3e-52 Identities = 187/230 (81%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||| || |||||||| ||||||||||| ||| Sbjct 509130 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 509071 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||| ||||||| |||||| ||||||||||||| || ||||| |||||| Sbjct 509070 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGA 509011 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| |||||||| || || || ||||| |||||||| | |||||| |||||| Sbjct 509010 GGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 508951 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || ||||| | |||||||||||| |||||||| Sbjct 508950 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508901 Score = 196 bits (216), Expect = 1e-44 Identities = 165/203 (81%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||| || |||||||| ||||||||||| ||| Sbjct 508674 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 508615 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||| ||||||| |||||| ||||||||||||| || |||||||||||| Sbjct 508614 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 508555 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| || ||||| |||||||| | ||||| || ||| Sbjct 508554 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCT 508495 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || || || ||||| || || Sbjct 508494 ACATCAAGAGTTATAGTTTTTCC 508472 >seq3 Length=1857262 Score = 199 bits (220), Expect = 9e-46 Identities = 172/213 (81%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | |||||| || || ||||| ||||||||||||||||||| ||||| || ||||| Sbjct 1608534 TACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTC 1608593 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || ||||||||||||||||||| || |||||||||||||| |||||||||||||| || Sbjct 1608594 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 1608653 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| |||||||| | || || ||||| || || || || || || || Sbjct 1608654 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTT 1608713 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | |||||||||||| || |||||||| Sbjct 1608714 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1608746 >seq2 Length=1757347 Score = 129 bits (142), Expect = 1e-24 Identities = 351/529 (66%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 |||||| | || | ||||| |||||||| | |||||| | ||| | || || || Sbjct 1513707 TACAAAAAAGCTGAAGCTTCATTTTGGACAGCTGAAGAAATTGATTTATCGAGCGATTTG 1513766 Query 268805 ATAGATTG-GAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTT 268863 | ||||| |||||||| || || | |||| | |||||| || || | || || Sbjct 1513767 AAAGATTTTGAAAAATTAAATGTCA-ATGAAAAACATTTTATAAAACATGTTTTAGCATT 1513825 Query 268864 TTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAG- 268921 |||||||| |||||||| || || |||||| | | ||| || || | ||||| Sbjct 1513826 TTTTGCAGCAAGTGATGGAATTGTATTAGAAAATTTGGCTAGTAAATTTTT---AAGAGA 1513882 Query 268922 -GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCA 268980 ||| | ||| |||||| | | ||||| || || |||||| | |||||||| || Sbjct 1513883 AGTAGAAATTATTGAAGCAAAAAAATTTTATTCTTTTCAAATAGCTGTTGAAAATATACA 1513942 Query 268981 TTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAG 269040 ||| || | || ||| ||||||| |||| |||||| | ||| | || |||| || Sbjct 1513943 TTCTGAAACATATAGTTTATTAATTGATAATTATATTAAAGATGAAAAAGAAAGATTAAA 1514002 Query 269041 ACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAA 269100 ||||| | |||| || ||| | | | ||| ||| | ||||||| || Sbjct 1514003 TTTATTTCATGCTATTGAAAATATACCAGCTATCAAAAATAAAGCATTATGGGCTGCTAA 1514062 Query 269101 ATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGG 269160 ||||||||| |||| ||| | |||||| | || ||| ||| ||||||||| Sbjct 1514063 ATGGATAAATGATACAAATTCTTTTGCAGAAAGAATTGTAGCTAATGCATGTGTAGAAGG 1514122 Query 269161 TATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCC 269220 ||||| ||| || |||| || || |||||||| || |||| | || | Sbjct 1514123 AATATTATTTAGTGGAAGTTTTTGTGCAATTTTTTGGTTTAA-AAAACAAAATAAATTAC 1514181 Query 269221 A-GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 | || ||||| || ||| ||||| || || ||||| || |||||||| Sbjct 1514182 ATGGTTTAACATTTAGTAATGAATTAATTAGTAGGGATGAGGGTTTACA 1514230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396128147032