Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq9 224 1e-53 seq12 214 2e-50 seq8 89.7 6e-13 >seq9 Length=861284 Score = 224 bits (248), Expect = 1e-53 Identities = 479/711 (67%), Gaps = 21/711 (3%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||| | ||||| |||||| | || || Sbjct 149354 AATTTTAATTTTGAAGAATTAGGTATAGGAGCGTTAGATGATGAATTTAAAATAATATTT 149295 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 || || ||||||| |||| | ||| | | |||||||| ||||||| |||| Sbjct 149294 CGAAGAACATTTGCAAGTAGAATATATCCAAATTATATAATAAAGCAATTAGGAATTAAA 149235 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| |||| || || ||||| |||| ||||||||| |||||||| |||| |||||| Sbjct 149234 CATGTAAAGGGTATGATATTATATGGTCCTCCTGGTACAGGTAAAACTCTAATAGCTCGA 149175 Query 164572 TGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 |||| | || | || || | | || || ||||||| ||||||| || ||| ||| Sbjct 149174 CAAATTGGTAAAACATTGAATGCTAGAGAACC--TAAAATTATTAATGGACCGGAAATAT 149117 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || |||||||||||| | ||||||| ||| || | || || ||| | || || ||| Sbjct 149116 TAAATAAATATGTAGGTCAATCAGAAGAAAATATTCGTAATTTATTTAAAGATGCAGAAT 149057 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAG 164749 |||| | || || | || | | ||||||| ||||| | || ||||| |||| Sbjct 149056 TAGAATATAAACAATCTGGAGAAAATTCATTATTACATATTATTATATTAGATGAAATAG 148997 Query 164750 ATGCTCTTTG----CAAAAA--ACGTGGTGATAATATT---------ATTCATGAT-GCA 164793 |||| |||| |||| | |||||| || | | ||||| ||| Sbjct 148996 ATGCAATTTGTCGACAAAGAGGTAGTGGTGCATCTACTGGGTCAGGAGTAAATGATAGCA 148937 Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 | |||||||| || | || ||||||||||| || | ||||||||||| ||| | Sbjct 148936 -TAGTTAATCAATTATTATCAAAAATAGATGGAGTTAACAGTTTAAATAATATATTATTA 148878 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | || ||||| || || ||| |||| ||||| || |||||| |||| |||||||| Sbjct 148877 ATCGGAATGACAAATAGAATAGATCTAATAGATGAAGCATTATTAAGACCAGGTCGATTT 148818 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973 ||||| | || |||||| |||||| | |||||||| | | ||||| ||||| || Sbjct 148817 GAATTACATATTGAAATATCATTACCAAATAAAGAAGGTAGAATCCAAATATTAAATATT 148758 Query 164974 CATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATA 165033 ||| || |||| | | ||| ||| | | |||||| || || | || || Sbjct 148757 CATACAAAAAATATGAGACAAAATAATAAGTTAAGTGCAGATGTAAATATAGAAGAATTA 148698 Query 165034 GCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 |||| ||| ||||| | ||||| ||| | || || ||||||||| Sbjct 148697 GCTGAAAGAACCCCAAATTTTTCAGGTGCAGAAATTGAAGGGTTAGTAAGA 148647 >seq12 Length=891477 Score = 214 bits (236), Expect = 2e-50 Identities = 414/598 (69%), Gaps = 20/598 (3%) Strand=Plus/Minus Query 6816 TTTTATAGCTTTTA-TATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATT 6874 ||||| |||||| | |||||| ||||| |||||||| || | ||| ||||||| Sbjct 690780 TTTTA-AGCTTTCAATATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATT 690722 Query 6875 CACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTA 6934 || |||||| | | | |||| || || | |||||| |||| | ||||||||| | Sbjct 690721 CAGCTGGTTGTAAGTTACATACTTGTGCTATCATATATGTAAATATAGAATAAGAAGCAA 690662 Query 6935 CATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTG-ACAAGATAAA 6993 ||||| || || |||| ||| | ||| ||||||||||| ||| ||| ||||| Sbjct 690661 TGTTAAATGGAACTCCTAGTCCTAAATCACAAGATCTTTGATA-CATAATACATGATAAT 690603 Query 6994 ATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT 7053 | || | | ||||||||||||| || | ||||||||||||||| | | |||| Sbjct 690602 TTTCCATCAAAAACATAAAATTGACATAAAATATGACATGGAGGTAATGCCATTTTATCT 690543 Query 7054 ATATCAGATGGATTCCAAGCAGTCATTAAA--ATACGTCTATCATTTGGATTTGTTTTTA 7111 | ||| | |||||| ||| ||| ||| || |||||| ||| | | | |||||| Sbjct 690542 AAATCTTTTACATTCCATGCA--CATAAAATAATTCGTCTA-CATGTAGGATCATTTTTA 690486 Query 7112 ATTTTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAA 7170 ||| || ||||| ||| || |||||| | ||| | | ||| ||||||| ||| | Sbjct 690485 ATTAAATTTATAATATTTTTTAGTTGATCAACACCTTTATCTTTATAATTATCATGCATA 690426 Query 7171 TTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCT 7230 | | |||| | ||| ||||||||||||||||| || |||||||||||||| | |||| Sbjct 690425 TCTGTATATTCAGCACCAAAATGTCTCCATTGGAATCCATAAATAGGACCAAGATCATTA 690366 Query 7231 TCTTCACGATG--ATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCC 7288 |||| | ||| || | | ||| | || |||| | ||| ||||| ||| |||| Sbjct 690365 ACTTCTCTATGAAATAATTTTCTATT--ATCTAAAAATTCTCTTGTTCCATTAGCTTCCC 690308 Query 7289 AAATATGTACAGAtttttttGATAA---ATTTAAAGAATTTGTAGATCCTTTAAGGAACC 7345 | || |||| ||||| | | || |||| |||||| |||| | | |||| Sbjct 690307 ATATTCTTACATTTTTTTCTAACAATGTATTT---CCATTTGTTTCTCCTCTTATAAACC 690251 Query 7346 ATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 |||| | |||||| | || || ||| ||| | | ||||||| || ||||| || || Sbjct 690250 ATAATAATTCTTCAATAATACCTCGCACAAATAATTTTTTTGTTGTTAATAATGGAAA 690193 >seq8 Length=706722 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| | ||| | ||||| | ||| ||| |||| || ||||| ||||| | Sbjct 467281 TAAAGTAAAAGTTCGATCTGTTCGAATTCCTCAAATTGGAGATAAATTTGCAAGTAGACA 467340 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || ||||||||| ||| |||||| | ||| | ||||||||||| ||||| || Sbjct 467341 TGGTCAAAAAGGTACAATTGGTATAACATATAGAATGGAAGATATGCCATTTACATCTGA 467400 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| | | || ||| ||||||| || ||||||||| ||||| ||| ||||| Sbjct 467401 TGGTACATTTCCTGATATTATTATGAATCCACATGCTGTTCCATCTCGTATGAC 467454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595870852946400