Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 434 1e-116 seq2 187 3e-42 >seq11 Length=1061054 Score = 434 bits (480), Expect = 1e-116 Identities = 1124/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Minus Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| ||||| | || | ||| |||||||| | || || ||||||| ||||||| Sbjct 552988 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 552929 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62251 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 552928 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 552870 Query 62252 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62310 |||| | || || ||| | | || || || |||| ||| | ||| || | Sbjct 552869 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 552811 Query 62311 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370 | || | | | ||| |||||||| || ||||| ||| ||||| | | | | Sbjct 552810 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 552751 Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430 | || ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 552750 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 552691 Query 62431 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62490 | || ||||||||||| | | | | |||||| | || | | || ||||| | || Sbjct 552690 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 552631 Query 62491 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTA 62547 ||| ||||||| |||| | ||| || ||||| Sbjct 552630 TTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTA 552571 Query 62548 GAATACCGTTACTGGCGTACGAT-CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62606 || || | ||| || | | | ||| ||||| || |||||||| | | | ||| Sbjct 552570 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 552512 Query 62607 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62666 | |||| | | ||||| || | ||||| || ||||| || || | ||||||| Sbjct 552511 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 552452 Query 62667 TCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATC 62724 |||| ||||| ||| | || ||||||| |||| || ||||| | ||| ||||||| Sbjct 552451 TCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATC 552394 Query 62725 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62784 |||| || || || || ||||||| |||||| ||||| || ||||||||||| ||| | Sbjct 552393 CTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTG 552334 Query 62785 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 62844 | |||||||| | || |||||||||| | |||||| ||| | ||| | ||| | Sbjct 552333 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCAT 552274 Query 62845 TCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAAGGCAACAG 62898 | ||| |||||||||| | |||| | |||| || || |||| | Sbjct 552273 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 552214 Query 62899 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 62958 | |||| ||||||||| ||||| |||| || | ||||| ||||| ||| || | Sbjct 552213 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 552154 Query 62959 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63018 ||||||||| || || ||||||||||||| ||||||| || ||||| ||||| | Sbjct 552153 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 552094 Query 63019 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63078 |||| | || |||| ||||||||| || ||| || || ||| || ||| | Sbjct 552093 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 552034 Query 63079 CTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTATACAATC 63135 || | || | | || ||| | || ||||| ||| ||| |||||| ||| Sbjct 552033 CTTGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATT 551977 Query 63136 GTTCGAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAAC 63194 ||| || || || |||| || ||| | || || |||||||||| |||||||| | Sbjct 551976 TTTCAAATTCTTCACCCC-AAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGT 551918 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 | ||| | || | || || |||| ||||||||| | |||||| | ||||| ||| | Sbjct 551917 GTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 551858 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 |||| |||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 551857 AATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 551798 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | ||||||||||||||| ||||| | |||| || | | || | ||| ||| Sbjct 551797 AAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 551738 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 || ||||||| |||||||| || | |||| ||||||| |||||||||| | ||| ||| Sbjct 551737 CCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 551678 Query 63435 GATATACCATTGGTACCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAG 63493 ||||||||||| || || |||| || | | | | | |||| | | | Sbjct 551677 GATATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAAC 551619 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||||| || || || ||||| ||||| || ||| ||||||| || ||| | ||||| Sbjct 551618 TCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACC 551559 Query 63554 CTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63612 || || ||| |||| | ||| |||||| || |||||||| |||| | Sbjct 551558 TTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTG 551500 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 |||| | ||||||||| ||||||| ||| || || || |||| | ||| | || || | Sbjct 551499 TTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGAT 551440 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 | || || | |||| || | ||| | ||| ||||| | || || | |||||| | Sbjct 551439 ATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATA 551380 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 || || || | ||||| || || ||||| ||| || || || ||| |||| || | Sbjct 551379 AATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATG 551320 Query 63793 TTTTAAAACCAAAATA 63808 |||| || |||||||| Sbjct 551319 TTTTGAATCCAAAATA 551304 >seq2 Length=1757347 Score = 187 bits (206), Expect = 3e-42 Identities = 599/918 (65%), Gaps = 25/918 (3%) Strand=Plus/Minus Query 32948 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAA--TGATTATCTTCTT-GAGACATAA 33004 |||| ||| |||||| ||| || ||||||||| | || | ||||| ||| ||||| Sbjct 1514604 TTATATTTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1514545 Query 33005 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33064 | || ||||| || || | || | |||||| || ||||| |||||||||| || | Sbjct 1514544 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1514485 Query 33065 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-- 33122 |||| ||||| ||| || || || || || | ||| ||| | |||| || Sbjct 1514484 ATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAAC 1514425 Query 33123 -TTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCA 33181 ||| ||| |||||||| || || ||||| |||||| ||| | |||||| Sbjct 1514424 ATTCT--AAT-AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCA 1514368 Query 33182 TTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCAT 33241 |||| || | | | || | || || || |||| | ||| | || || | Sbjct 1514367 TTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTT 1514308 Query 33242 CTGTTATAATA----GATCTAACGGTTTCT--TCACTCGGTGGATGCAATAAATGTTTAA 33295 || | | ||| || | ||| ||||| | | | | | |||||| || Sbjct 1514307 CTTTAACTATATTTTGAAC-AACATTTTCTGGTAATTTATTTTCT--AATAAAC---TAT 1514254 Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 | || ||||| ||||| || | |||||| || |||||||||| ||| || || Sbjct 1514253 AAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAA 1514194 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || | || | | | | ||||||| |||||| || | | || |||| Sbjct 1514193 ATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCAC 1514134 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33475 ||| || ||||||||||| ||| || | || ||| ||| || || | | Sbjct 1514133 TAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTGTAT 1514074 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 ||| |||||| || |||||| || || ||||| | | || || |||| || | Sbjct 1514073 CATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAG 1514014 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 ||| ||| | || | |||| || |||||||| |||| |||| || || | ||||| Sbjct 1514013 CATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTAT 1513954 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 | |||| ||||| || ||||||| || || ||||| || || | | || || Sbjct 1513953 ATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAA 1513894 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACT 33713 |||| | ||||||| | ||||| || | ||||||||||| || ||||| ||||| Sbjct 1513893 TAATTTCTACTTCTCTTAAAAAT--TTACTAGCCAAATTTTCTAATACAATTCCATCACT 1513836 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33773 ||||||||||| || || |||||||||||||||| |||||| | ||| ||| | Sbjct 1513835 TGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTC 1513776 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || || Sbjct 1513775 AAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGC 1513716 Query 33834 CTTTTTATACATGTTCCA 33851 ||||| || | ||||| Sbjct 1513715 TTTTTTGTAAAAATTCCA 1513698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946000826640