Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11 448 6e-121 seq2 210 3e-49 >seq11 Length=1061054 Score = 448 bits (496), Expect = 6e-121 Identities = 1127/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Minus Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| ||||| | || | ||| |||||||| | ||||| ||||||| ||||||| Sbjct 552988 TGATCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 552929 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62106 |||| ||||||||| || || |||| ||| | |||| | | ||| || | Sbjct 552928 CAAACAGTTTTATACAATTCTTTTAA-ATCAGCAGGAATTTCACTAATATATTGTACACT 552870 Query 62107 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62165 |||| | || || ||| | | || || || |||| ||| | ||| || | Sbjct 552869 TCCATTGTGAGCAATCAATTGTTGT-TTCATATCTTCATCCCAAAGGCCTCTATCAAAAA 552811 Query 62166 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62225 | || | | | ||| |||||||| || ||||| ||| ||||| | | | | Sbjct 552810 GATCTTTTAATAAATGAGGATTAACAACAAAGAATTCACCACTTAATACACGTCTATAAT 552751 Query 62226 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62285 | || ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 552750 AGATGTTACTTGTATATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 552691 Query 62286 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62345 | || ||||||||||| | | | | |||||| | || | | || ||||| | || Sbjct 552690 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTT 552631 Query 62346 TTAGAGGTTCCCAATTCCAAAGATCCGACGGTACA---ACNNNNNNNNNNNNNNNTTGTA 62402 ||| ||||||| |||| | ||| || ||||| Sbjct 552630 TTAATAAATCCCAATCCCAATATTTATTATCTACTTTTACATTCCACATATCAAATTGTA 552571 Query 62403 GAATACCGTTACTGGCGTACGAT-CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62461 || || | ||| || | | | ||| ||||| || |||||||| | | | ||| Sbjct 552570 ATATCCCTTGACTTGC-TGGGCTACCTTTATATGATTCATATGGTCCATGTATTTGTGCT 552512 Query 62462 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62521 | |||| | | ||||| || | ||||| || ||||| || || | ||||||| Sbjct 552511 AATTCAACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAAT 552452 Query 62522 TCTTGCGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 62579 |||| ||||| ||| | || ||||||| |||| || ||||| | ||||||||||| Sbjct 552451 TCTTTAGCTTCATCAGATT--CATATGGATATCTTAAAAGCATAAATGTGTCTGCTAATC 552394 Query 62580 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62639 |||| || || || || ||||||| |||||| ||||| || ||||||||||| ||| | Sbjct 552393 CTTGTACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTG 552334 Query 62640 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 62699 | |||||||| | || |||||||||| | |||||| ||| | ||| | ||| | Sbjct 552333 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCAT 552274 Query 62700 TCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAATGCAACAG 62753 | ||| |||||||||| | |||| | |||| || ||||||| | Sbjct 552273 ATAATTTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTG 552214 Query 62754 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 62813 | |||| ||||||||| ||||| |||| || | ||||| ||||| ||| || | Sbjct 552213 AAGCCAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATTATTTCACAACATA 552154 Query 62814 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 62873 ||||||||| || || ||||||||||||| ||||||| || ||||| ||||| | Sbjct 552153 AATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTT 552094 Query 62874 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 62933 |||| | || |||| ||||||||| || ||| || || ||| || ||| | Sbjct 552093 TATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAAT 552034 Query 62934 CTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATC 62990 || | || | | || ||| | || |||||| ||| ||| |||||| ||| Sbjct 552033 CTTGTGC---AAGAACAGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAATT 551977 Query 62991 GTTCGAACTCGTCTCCCCAAACATTGTC-CAGTCCAGGACATTCATCCGGACACATCAAC 63049 ||| || || || |||| || ||| | | || |||||||||| |||||||| | Sbjct 551976 TTTCAAATTCTTCACCCC-AAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGT 551918 Query 63050 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63109 | ||| | || | || || |||| ||||||||| | |||||| | ||||| ||| | Sbjct 551917 GTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 551858 Query 63110 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63169 |||| |||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 551857 AATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 551798 Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229 | ||||||||||||||| ||||| | |||| || | | || | ||| ||| Sbjct 551797 AAAATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCA 551738 Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289 || ||||||| |||||||| || | |||| ||||||| |||||||||| | |||||| Sbjct 551737 CCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTT 551678 Query 63290 GATGTACCATTGGTCCCTGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAG 63348 ||| ||||||| || ||| |||| || | | | | | |||| | | | Sbjct 551677 GATATACCATTAGTTCCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACAGCAAC 551619 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||||| || || || ||||| ||||| || ||| ||||||| || ||| | || || Sbjct 551618 TCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACC 551559 Query 63409 CTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63467 || ||| ||| |||| | ||| |||||| || |||||||| |||| | Sbjct 551558 TTCGATAGAATCTGATTTCATAGATAA-TAGAAAGCAAGATGACATTTGTGGACGTGGTG 551500 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 |||| | ||||||||| ||||||| ||| || || || |||| | ||| | || || | Sbjct 551499 TTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGAT 551440 Query 63528 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63587 | || || | |||| || | ||| | ||| ||||| | || || | |||||| | Sbjct 551439 ATGTTTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATA 551380 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 || || || | ||||| || || ||||| ||| || || || ||| |||| || | Sbjct 551379 AATGTTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATG 551320 Query 63648 TTTTAAAACCAAAATA 63663 |||| || |||||||| Sbjct 551319 TTTTGAATCCAAAATA 551304 >seq2 Length=1757347 Score = 210 bits (232), Expect = 3e-49 Identities = 615/932 (66%), Gaps = 29/932 (3%) Strand=Plus/Minus Query 32305 TTATGTTTCTTTAAAAGTCAACATCTAGAGAAAAA--TGATTGTCTTCTT-GAGACATAA 32361 |||| ||| |||||| ||| || || |||||| | || | ||||| ||| ||||| Sbjct 1514604 TTATATTTTCTTAAAAATCAGTATTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1514545 Query 32362 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 32421 | || ||||| || || | || | |||||| || ||||| ||||| |||| ||| | Sbjct 1514544 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1514485 Query 32422 ATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAA-- 32479 |||| ||||| ||| ||| || || || || | ||| ||| | |||| || Sbjct 1514484 ATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAAAC 1514425 Query 32480 -TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 32538 ||| ||| |||||||| || |||||||| |||||| ||| | |||||| Sbjct 1514424 ATTCT--AAT-AATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCA 1514368 Query 32539 TTCCTATAAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596 |||| || | | | || |||| |||| || |||| | ||| | || || Sbjct 1514367 TTCCAATTAAATCACAAGGTAAAGATTCACA--AATAAATGATCTTTCTACTTCAACTGC 1514310 Query 32597 GTCTGTTATAATAGATCTT-----ACTGTTTCT--TCACTCGGTGGATACAATAAATGTT 32649 ||| ||| | || || || || ||||| | | | | || ||||| Sbjct 1514309 TTCT-TTA-ACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTA--ATAAAC--- 1514257 Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709 || | || ||||| ||||| |||| |||||| || |||||||||||||| || Sbjct 1514256 TATAAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTAC 1514197 Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 32769 ||| || | || | | | | ||||||| |||||| || | ||| || Sbjct 1514196 TAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTC 1514137 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 32829 || ||| || ||||||||||| ||| || | || ||| ||| || || Sbjct 1514136 CACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAAAGAATTTG 1514077 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 | |||| |||||| || |||||| || || ||||| | | || || | || | Sbjct 1514076 TATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAA 1514017 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 |||||| ||| | || | |||| || |||||||| ||| ||||||| || | || Sbjct 1514016 TAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAAC 1513957 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 |||| |||| ||||| || ||||||| || |||||||| || || | | || | Sbjct 1513956 TATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTT 1513897 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCA 33068 | |||| | ||||||| | ||||| | || || |||||||| || ||||| ||| Sbjct 1513896 CAATAATTTCTACTTCTCTTAAAAATT-TACTAGCCAAATTTTCTAATACAATTCCATCA 1513838 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 || ||||||||||| || || |||||||||||||||| |||||| | ||| ||| Sbjct 1513837 CTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTT 1513778 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || Sbjct 1513777 TCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCA 1513718 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATA 33220 || ||||| || | |||||| | ||| |||| Sbjct 1513717 GCTTTTTTGTAAAAATTCCAAACTTCAGGATA 1513686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630780258400