Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq11 136 3e-27 seq3 123 2e-23 >seq11 Length=1061054 Score = 136 bits (150), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || || || ||| |||| || | || || || | || Sbjct 508673 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508732 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| || |||||||| || || ||||| Sbjct 508733 GATACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATCCCTCCTGAT 508789 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||||||||||||| | | || | ||||| Sbjct 508790 CAACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTAT 508849 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || |||||||||| |||| |||||||||| Sbjct 508850 AATATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 508899 Score = 136 bits (150), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || || || ||| |||| || | || || || | || Sbjct 508901 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508960 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| || || ||||| || ||||| |||||| Sbjct 508961 GATACTATTGAA--AATGTTAAAGCTAAAATCCAA-GATAAAGAGGGAATTCCTCCTGAC 509017 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||||||||||||| | | || | ||||| Sbjct 509018 CAACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTAT 509077 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || |||||||||| |||| |||||||||| Sbjct 509078 AATATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 509127 Score = 123 bits (136), Expect = 2e-23 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAGCAA 25082 || ||| | || || | || || ||| | ||||| ||||| || | || |||| | Sbjct 508472 GGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAA--AATGTTAAAGCTA 508529 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 ||| ||| || |||||||| ||||| ||||| ||||| | | |||||||| || ||| Sbjct 508530 AAATTCAA-GATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAA 508588 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||||||| | | || | ||||| ||||||||||||||||| || ||||| Sbjct 508589 CAATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACAT 508648 Query 25203 TTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| |||| |||||||||| Sbjct 508649 TTAGTTTTAAGATTAAGAGGAGG 508671 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || || || || || | || || | || || || | || Sbjct 509129 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 509188 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| || |||||||| ||||| |||||| Sbjct 509189 GATACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCTCCTGAC 509245 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || |||||||||||||||| | | || | || || Sbjct 509246 CAACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTAT 509305 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || ||||| |||| |||| |||||||||| Sbjct 509306 AACATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 509355 >seq3 Length=1857262 Score = 123 bits (136), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || || ||||| ||| | ||||| | || || || | || Sbjct 1608744 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1608685 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||| || | || |||| |||| ||| || |||||||| ||||| ||||| Sbjct 1608684 TGACACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCTCCTGA 1608628 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | |||||||| || ||||| |||||||||| | || | || || Sbjct 1608627 TCAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTA 1608568 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || || ||||||| || Sbjct 1608567 TAATATTCAAAAAGAGTCAACCTTACATTTGGT 1608535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327186697510