Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq11 116 3e-21 seq3 95.1 1e-14 >seq11 Length=1061054 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| ||||| | || || |||||||| || | || ||||| | Sbjct 508673 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508732 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 508733 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 508792 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | |||| ||| || |||||||| |||||| || ||| | | ||||||||| Sbjct 508793 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 508852 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || ||||||||||| || |||||||||| || Sbjct 508853 ATTCAAAAAGAATCAACTTTACATTTAGTTTT 508884 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| ||||| | || || |||||||| || | || ||||| | Sbjct 508901 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508960 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| ||||| || ||||| || |||| || ||| Sbjct 508961 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 509020 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | |||| ||| || |||||||| |||||| || ||| | | ||||||||| Sbjct 509021 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 509080 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || ||||||||||| || |||||||||| || Sbjct 509081 ATTCAAAAAGAATCAACTTTACATTTAGTTTT 509112 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| || |||||||| |||| ||||||||||| | |||| ||| || ||| Sbjct 508529 AAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAA 508588 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 ||||| |||||| || ||| | | ||||||||||| ||||||||||| || ||||| Sbjct 508589 CAATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACAT 508648 Query 111391 TTAGTGTT 111398 ||||| || Sbjct 508649 TTAGTTTT 508656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| ||||| | || || || || || || | || ||||| | Sbjct 509129 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 509188 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| |||||| || |||||||| |||| || ||| Sbjct 509189 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCAA 509248 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | |||| ||| || |||||||| |||||| || ||| | | || ||||| Sbjct 509249 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 509308 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || ||||||||||| || ||||| |||| || Sbjct 509309 ATTCAAAAAGAATCAACCTTACATCTAGTTTT 509340 >seq3 Length=1857262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||| ||||| ||||| | ||||| ||||| || || | || ||||| Sbjct 1608746 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1608687 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || || ||| | || ||| |||||| || |||||||| |||| ||| Sbjct 1608686 TCTGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 1608627 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||||| | |||| ||| || ||||| || |||||| | ||| | | || ||| Sbjct 1608626 CAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTAT 1608567 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGT 111395 ||||| |||||||| || || ||||||| || Sbjct 1608566 AATATTCAAAAAGAGTCAACCTTACATTTGGT 1608535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423039206006800