Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq11 122 7e-23 seq3 87.8 2e-12 >seq11 Length=1061054 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| ||||||||||||| || |||||||||||||| || ||||| Sbjct 508902 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 508843 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | |||||| | |||||| ||||| | || | | ||||| || ||| Sbjct 508842 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 508783 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || |||||||| || ||| ||| | |||| | | ||||| || |||| | ||| Sbjct 508782 GGGATTCCTTCTTTATCTTGAAT-TTTAGCTTTAACATTTTCAATAGTATCGGATGGTTC 508724 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | |||||||||||||||||||| Sbjct 508723 TACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508673 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| ||||||||||||| || |||||||||||||| || ||||| Sbjct 509130 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 509071 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | |||||| | |||||| ||||| | || | | |||||||| ||| Sbjct 509070 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGA 509011 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| || ||||| || || ||| | |||| | | ||||| || |||| | ||| Sbjct 509010 GGAATTCCCTCTTTATCTTGGAT-TTTAGCTTTAACATTTTCAATAGTATCGGATGGTTC 508952 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | |||||||||||||||||||| Sbjct 508951 TACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508901 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || | || ||| ||||||| ||||| || ||||||||||||||||| || || Sbjct 509356 ACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGA 509297 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || | | |||||| | |||||| ||||| | || | | |||||||| ||||| Sbjct 509296 TAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGG 509237 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGA 114333 ||| |||||||| || ||| ||| | |||| | | ||||| || |||| | ||| | Sbjct 509236 AATTCCTTCTTTATCTTGAAT-TTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTA 509178 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | || || || || | |||||||||||||||||||| Sbjct 509177 CATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 509129 Score = 91.5 bits (100), Expect = 1e-13 Identities = 120/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| ||||||||||||| || |||||||||||||| || ||||| Sbjct 508674 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 508615 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | |||||| | |||||| ||||| | || | | ||||| || ||| Sbjct 508614 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 508555 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAA 114315 ||||| |||||||| || ||| ||| | |||| | | ||||| Sbjct 508554 GGAATTCCTTCTTTATCTTGAAT-TTTAGCTTTAACATTTTCAA 508512 >seq3 Length=1857262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTC 114232 || ||||||| || || ||||||||||| || || || | | || || | |||||| Sbjct 1608535 ACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAAT-GTTCTGCCATCTTC 1608593 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||||| ||||| | || | | ||||| || |||||||| |||||||| || Sbjct 1608594 TAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 1608653 Query 114293 AATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 ||| ||| | |||| | | ||||| ||||| | | ||| || || | || | |||| Sbjct 1608654 AAT-TTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTT 1608712 Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| | ||||||||||| || ||||| Sbjct 1608713 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1608743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133611460248