Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq11 122 2e-22 seq3 107 5e-18 >seq11 Length=1061054 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | || || | || |||||||||||||| || || || Sbjct 508864 TTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAA 508805 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | ||||||||||||||||| || ||||| ||||| || || Sbjct 508804 AATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATT 508745 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | |||||| || || || || || || || || | || || || Sbjct 508744 TTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTAC 508685 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 508684 AAAAATCTGCAT 508673 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | || || | || |||||||||||||| || || || Sbjct 509320 TTCTTTTTGAATGTTATAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAA 509261 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | ||||| | || |||||||||||||| || ||||| ||||| || || Sbjct 509260 AATTAATCTTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATT 509201 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | |||||| || || || || ||||| || || | || || || Sbjct 509200 TTCAATAGTATCGGATGGTTCTACATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTAC 509141 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 509140 AAAAATCTGCAT 509129 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | || || | || |||||||||||||| || || || Sbjct 509092 TTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAA 509033 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | ||||| | || ||||| |||||||| |||||||| ||||| || || Sbjct 509032 AATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATT 508973 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | |||||| || || || || || || || || | || || || Sbjct 508972 TTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTAC 508913 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 508912 AAAAATCTGCAT 508901 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | || || | || |||||||||||||| || || || Sbjct 508636 TTCTTTTTGAATATTATAATCAGATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAA 508577 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || |||||||||||||| || ||||| ||||| || || Sbjct 508576 AATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATT 508517 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 ||| |||| ||| | ||||| || || || || || || || Sbjct 508516 TTCAATAGTATCAGATGGCTCTACATCAAGAGTTATAGTTTTTCC 508472 >seq3 Length=1857262 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| ||||||||||| | | || | || |||||||| |||||||| || || Sbjct 1608553 TCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCAGCAAAA 1608612 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | |||||| | || |||||||||||||| || ||||| ||||| || ||| Sbjct 1608613 ATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTT 1608672 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | ||| || || || ||||| || || ||||| | || || || Sbjct 1608673 TCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTTTTTACA 1608732 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 1608733 AAGATTTGCATT 1608744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652072394412