Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 109 5e-19 seq3 91.5 1e-13 >seq11 Length=1061054 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||||||| | || ||||||||||||||||| || || | | || | Sbjct 509346 AATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAGTGTTCTA 509287 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || ||||| ||||||||||||||| Sbjct 509286 CCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCTTCT 509227 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | ||||| | || || || | ||| Sbjct 509226 TTATCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGT 509168 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || || || |||||||| ||||| ||||| Sbjct 509167 TATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 509129 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || |||||||||||||| || ||||| | | || | Sbjct 509118 AATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTA 509059 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || ||||| ||||||||||| ||| Sbjct 509058 CCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCT 508999 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | ||||| | || || || | ||| Sbjct 508998 TTATCTTGGA-TTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGT 508940 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||| || || || || |||||||| ||||| ||||| Sbjct 508939 TATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508901 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || |||||||||||||| || ||||| | | || | Sbjct 508890 AATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAGATAGTGTTCTA 508831 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || || || ||||| ||||||||| Sbjct 508830 CCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCT 508771 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | ||||| | || || || | ||| Sbjct 508770 TTATCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGT 508712 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||| || || || || |||||||| ||||| ||||| Sbjct 508711 TATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508673 >seq3 Length=1857262 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||||||||| || || || | | || | | ||||| | ||| || || Sbjct 1608547 GTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCA 1608606 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | | || || || ||||||||||||||||| ||||| | |||| ||||| Sbjct 1608607 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG-AATTTTAGCTTT 1608665 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || ||| | || || || | ||| | || || ||||| || || Sbjct 1608666 AACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 1608725 Query 64426 TTTTACGAAAATTTGCATTTTAATAATGATACACTTAAT 64464 |||||| || ||||||||||| ||| ||| | |||| Sbjct 1608726 TTTTACAAAGATTTGCATTTTCGTAAGTATAAAAATAAT 1608764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643838183760