Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 1e-15 >seq11 Length=1061054 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||| || |||| || | ||||||| ||||| | |||| || ||||||||||| ||||| Sbjct 509359 GCAACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTC 509300 Query 138444 GCTCATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCC 138501 ||||| | | || || | |||||| || | | | |||| | |||||||| Sbjct 509299 AG--ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCA 509242 Query 138502 GGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGA 138560 ||||| || |||||||| || ||| |||| | ||||| | ||| | || |||| | Sbjct 509241 GGAGGAATTCCTTCTTTATCT-TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGG 509183 Query 138561 CTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || | || | || || ||||| | |||||||||||||||||||| Sbjct 509182 TTCTACATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 509129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--T 138460 ||||||||||||| |||| || |||||||| || || || ||||| | | | Sbjct 508884 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG--ATAGTGTTCTACCAT 508827 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | || | |||||| || | | | |||| | ||||| || ||||| || |||||||| | Sbjct 508826 CTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAGGGATTCCTTCTTTAT 508767 Query 138521 CGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 | ||| |||| | ||||| | ||| | || |||| | || || || | || | Sbjct 508766 CT-TGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATG 508708 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| | |||||||||||||||||||| Sbjct 508707 GTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--T 138460 ||||||||||||| |||| || |||||||| || || || ||||| | | | Sbjct 509112 AAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG--ATAGTGTTCTACCAT 509055 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | || | |||||| || | | | |||| | |||||||| ||||| || || ||||| | Sbjct 509054 CTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGGAATTCCCTCTTTAT 508995 Query 138521 CGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 | |||||| ||| | | ||| | || |||| | || || || | || | | Sbjct 508994 CTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTACATCAAGAGTTATGG 508935 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||||| | |||||||||||||||||||| Sbjct 508934 TTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261444694880