Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11 170 2e-37 >seq11 Length=1061054 Score = 170 bits (188), Expect = 2e-37 Identities = 718/1127 (64%), Gaps = 10/1127 (1%) Strand=Plus/Plus Query 111870 CATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATT 111929 || ||| | |||| | || ||| ||||||||| || |||||| |||| ||||| | Sbjct 551628 CAAGATATAAGAGGACAGAATTCTTATATTAGAGGAACTAATGGTATATCAAATGGTTTA 551687 Query 111930 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC-- 111987 |||||||| | | || ||||| | ||||| | |||||| | |||| ||| | Sbjct 551688 GTTCCAATGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAAGGTGGAGGAAAA 551747 Query 111988 -GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046 | || || ||| | || || ||| | || |||||||| | ||||| | || || | Sbjct 551748 AGAAAAGGTTCTTTTGCTGTATATATAGAACCATGGCATTCTGATATTTTTGAATTTTTA 551807 Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106 || || | || || ||| | || || | | ||| | || | ||| | Sbjct 551808 GATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTAGAGATTTATTTTATGCTATT 551867 Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166 ||| | || ||| | || ||||| ||||| | || | | | |||||| | || | ||| Sbjct 551868 TGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAGAAATTGGACACTAATGTGT 551927 Query 112167 CCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || | | || || | || | |||||| || |||||| | || ||| Sbjct 551928 CCTAATGAATGTCCAGGGTTAAGTGAATCTTGGGGTGAAGAATTTGAAAAATTATATACA 551987 Query 112227 AAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCT 112286 || || || ||||||| | | | || || | || ||| | ||| ||| Sbjct 551988 AAATATGAAGAAGAAAATTTAGGAAAAAAAACTGTTCTTGCACAAGATTTATGGTTTGCT 552047 Query 112287 ATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAAC 112346 ||| | | ||||| || |||||| |||||||||| | || ||||| || ||||| Sbjct 552048 ATTTTACAAAGTCAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAAT 552107 Query 112347 CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATC 112406 || ||||||||| ||||| || || || || || | ||| ||||| Sbjct 552108 TCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAATTTATGTTGTGAAATA 552167 Query 112407 TTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCC 112466 | |||| |||| ||||| ||||| ||||| | || ||||| || | | Sbjct 552168 ATTGAATATACATCACCTGATGAAGTAGCTGTTTGTAATTTGGCTTCAATTGCATTATGC 552227 Query 112467 AAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAA 112526 || | ||| ||| ||| | ||| |||||||| | ||||| | | || |||| ||| Sbjct 552228 AAATTTGTTGATAGAGAAAAAAAAGAATTTGATTTTAAAAAATTATATGATATTACTAAA 552287 Query 112527 ACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCT 112586 | | | || | ||| || | | | ||||||| ||||||| |||||| || | ||| Sbjct 552288 ATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGCT 552347 Query 112587 CGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTA 112646 ||||| |||| ||||| || || ||||| | || || ||||| | || || | Sbjct 552348 GAAAAATCAAATAAAAGACATCGACCTATTGGAATAGGAGTACAAGGATTAGCAGACACA 552407 Query 112647 TTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATA 112706 || || |||| | | ||| ||| || || ||||| || ||| | ||| | ||| Sbjct 552408 TTTATGCTTTTAAGATATCCATATGAATCTGATGAAGCTAAAGAATTAAATAAAAGAATA 552467 Query 112707 TTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGT 112766 ||||| ||||||||| | || ||| | || | | || || ||| | | |||| Sbjct 552468 TTTGAAACAATGTATTATGCAGCTTTAGAAATGTCTGTTGAATTAGCACAAATACATGGA 552527 Query 112767 CCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 112826 ||||||||| | | | | ||| ||||| |||||| | | ||||||||||||| | Sbjct 552528 CCATATGAATCATATAAAGGTAGCCCAGCAAGTCAAGGGATATTACAATTTGATATGT-G 552586 Query 112827 GAAGGTGAGACCA-AGCTTCACTA---CGACTGGGACGCTCTCAAGGAACGCATCAAGGA 112882 ||| || | | | | | | || || ||||| | | || || | ||| | Sbjct 552587 GAATGTAAAAGTAGATAATAAATATTGGGATTGGGA-TTTATTAAAAAAAAAAATAAGTA 552645 Query 112883 -GAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA 112941 | | || | | || |||| | | ||||| ||||||||||| || || |||||| Sbjct 552646 TGCATGGATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAA 552705 Query 112942 TCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 | ||||| |||||||||| || ||||| || || | ||||||||| Sbjct 552706 TTTTGGGAAATAATGAATCATTCGAACCATATACAAGTAACATCTAT 552752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741205070880