Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq11 398 4e-106 >seq11 Length=1061054 Score = 398 bits (440), Expect = 4e-106 Identities = 1005/1503 (67%), Gaps = 74/1503 (5%) Strand=Plus/Minus Query 25059 ATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATG 25118 ||||||| || ||||||||||||| || ||||| ||||| || ||||||||||| || Sbjct 552735 ATGGTTCGAATGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGCTGTTGGCATAGGTG 552676 Query 25119 CTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAAT 25178 ||| | || |||||||| || |||| || || | || ||||||| |||||||| Sbjct 552675 CTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCAAT 552616 Query 25179 CTAAAT---TATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCC-- 25233 | ||| ||||||||| | | || || ||| ||||||||||| | || Sbjct 552615 CCCAATATTTATTATCTACTTTTACATTC----CACATA--TCAAATTGTAATATCCCTT 552562 Query 25234 -ACTTGCTGCAGGCGA--TTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATC 25290 |||||||| ||| | || || | | | |||| || | | || ||| | || Sbjct 552561 GACTTGCTG--GGCTACCTTTAT---ATGATTCATATGGTCCATGTATTTGTGCTAATTC 552507 Query 25291 TTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTT 25350 || ||||| || ||||||||||| ||||||| || ||| ||||| || Sbjct 552506 AACAGACATTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAATTCTTT 552447 Query 25351 AGCTTTTTCTCCATCGAAAGCAATTTCCATTAAGGCG--AACGTATCTGCTAATCCCTGA 25408 ||||| || || | | | | | | || || || || ||||||||||| || Sbjct 552446 AGCTTCATCAGATTCATATGGATAT--CTTAAAAGCATAAATGTGTCTGCTAATCCTTGT 552389 Query 25409 ACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAG 25468 ||||||| ||||| || |||||| | ||||| | | |||| |||| |||| || Sbjct 552388 ACTCCTATTCCAATAGGTCGATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAA 552329 Query 25469 AAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTG-TATTTTCTCAA 25527 ||||| | || || | ||||||| ||| | | || || || ||| | | || Sbjct 552328 TAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATAT-AA 552270 Query 25528 CTCAATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGC 25587 | |||| ||||| | | ||| | ||||| | |||||||| |||| || Sbjct 552269 TTTTTTAAAATCAAATT---------CTTTTTTTTCTCTATCAACAAATTTGCATAATGC 552219 Query 25588 GATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGA 25646 ||||| || ||||||||||||||| ||| | | || | | ||||||| | || || Sbjct 552218 AATTGAAGCCAAATTACAAACAGCTACTTCAT-CAGGTGATGTATATTCAATTATTTCAC 552160 Query 25647 TACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAA 25706 |||||| || ||| |||| ||| ||| |||| ||||||||| | ||| ||| Sbjct 552159 AACATAAATTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATT-ACAT 552101 Query 25707 T-ATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCC 25765 |||||||||| | |||||| || ||||| |||||| | |||||| | Sbjct 552100 GCATCTTTATATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAAC 552041 Query 25766 CAAAGTTCTCTCGCTTTTAC---TTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCG 25822 || | ||| || || ||| ||| | || || | || || | || Sbjct 552040 CATAAATCTTGTGCAAGAACAGTTTTTTTTCCTAAATTTTCTTCTT---CATATTTTGTA 551984 Query 25823 TAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGA 25882 || | || ||||||||| | | || || || | || | || | Sbjct 551983 TATAATTTTTCAAATTCTTCAC-------CCCA------AGATTCACTTAACCCTGGACA 551937 Query 25883 ATAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAA 25942 | || | ||||| | || ||||| ||||| | ||| | | |||||||||| Sbjct 551936 TTCAT--TAGGACACATTAGTGTCCAATTTCTATTTTCTTTTACTCTTTTCATAAATAAA 551879 Query 25943 TCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTC 26002 || || | ||| || ||||||||||||||||| ||||| | ||||||||| || ||||| Sbjct 551878 TCAGGTACCCAAATAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTT 551819 Query 26003 TTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAA 26062 ||| ||| |||||| || ||||||||||| || ||||||||||||| ||| | ||||||| Sbjct 551818 TTTCTTAAATCTAAAAATTCAAAAATATCAGAATGCCATGGTTCTATATATACAGCAAAA 551759 Query 26063 CTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTC 26122 |||||||||||||||||||||||||||||| ||||| || || ||||| |||||| | Sbjct 551758 GAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTAGCTGTATCATTAAAAACTCTT 551699 Query 26123 AACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT-TGGATCCTGTCGA 26181 |||||||||||||| ||| |||| | || || || | ||| | | || ||||| Sbjct 551698 AACATTGGAACTAAACCATTTGATATACCATTAGTTCCTCTAATATAAGAATTCTGTC-C 551640 Query 26182 TCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC 26241 ||| ||||| || || || || || || || || ||| ||| ||||| | Sbjct 551639 TCTTATATCTTGTACAGCAACTCCTATACCTCCCGCGGTTTTACTAATTAAAGCACATTG 551580 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGA 26301 | | ||| || || || |||| || ||| |||||| ||||| ||| ||||| Sbjct 551579 TTTTAATGTTTCAAATATACCTTCGATAGAATCTGATTTCATAGATAATAGAAAGCAAGA 551520 Query 26302 AGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATA 26361 || | ||| | | | | ||||||||||||||||||||| || |||||||| || |||| Sbjct 551519 TGACATTTGTGGACGTGGTGTTCCTGAATTAAATAATGTAGGAGTAGCATGTGTGAAATA 551460 Query 26362 TCCTTC----AC-TCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTA 26416 | ||| || | ||| || ||| ||||| | | ||| || | || | || Sbjct 551459 T--TTCTGAGACATTAAA--TG-ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGT 551405 Query 26417 ACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCA 26476 | | |||| | | ||| | | | || ||| || |||||||| | ||||| | | Sbjct 551404 ATTCCAATTGATACTCTCATTAATAAATGTTGTGGACGTTCAATAATTTTATTGT--TAA 551347 Query 26477 TCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATCT 26536 | |||| ||||| ||| ||||||| ||||| |||||||||||||||| || |||||| Sbjct 551346 TTCGTAAT-AAATATGATCTTTCTAATGTTTTGAATCCAAAATAATCATAGTTAAAATCT 551288 Query 26537 CTT 26539 ||| Sbjct 551287 CTT 551285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039525075550