Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11 152 6e-32 >seq11 Length=1061054 Score = 152 bits (168), Expect = 6e-32 Identities = 719/1129 (64%), Gaps = 16/1129 (1%) Strand=Plus/Plus Query 75470 CATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATT 75529 || ||| | |||| | || ||| |||| | || || |||||| |||| ||||| | Sbjct 551628 CAAGATATAAGAGGACAGAATTCTTATATTAGAGGAACTAATGGTATATCAAATGGTTTA 551687 Query 75530 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC-- 75587 |||||||| | | || ||||| | ||||| | |||||| |||||| || | Sbjct 551688 GTTCCAATGTTAAGAGTTTTTAATGATACAGCTAGATATGTAGATCAAGGTGGAGGAAAA 551747 Query 75588 -GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTT 75646 | || || || | || || || | |||||||||||| | ||||| | || || | Sbjct 551748 AGAAAAGGTTCTTTTGCTGTATATATAGAACCATGGCATTCTGATATTTTTGAATTTTTA 551807 Query 75647 GAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTG 75706 || ||| || || || ||| | ||||| | ||||||| | |||| | | Sbjct 551808 GATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTAGAGATTTATTTTATGCTATT 551867 Query 75707 TGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGT 75766 ||| | || || | || ||||| | || | || | | | ||| | || | ||| Sbjct 551868 TGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAGAAATTGGACACTAATGTGT 551927 Query 75767 CCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACA 75826 || | | ||||| | || | |||||| || |||||| | || ||| Sbjct 551928 CCTAATGAATGTCCAGGGTTAAGTGAATCTTGGGGTGAAGAATTTGAAAAATTATATACA 551987 Query 75827 AAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCT 75886 || |||||||| || | || || ||||| | || ||| | ||| ||| Sbjct 551988 AAATATGAAGAAGAAAATTTAGGAAAAAAAACTGTTCTTGCACAAGATTTATGGTTTGCT 552047 Query 75887 ATTCT-CAAA-TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTA 75944 ||| | |||| ||| | | || ||||| |||||||||| | || || ||||| |||| Sbjct 552048 ATTTTACAAAGTCAAATA--GAAACTGGTGTACCATATATGTTATATAAAGATGCATGTA 552105 Query 75945 ACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAA 76004 | || ||| ||||| ||||| |||||||| || | ||| | || |||| Sbjct 552106 ATTCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGTAATTTATGTTGTGAAA 552165 Query 76005 TTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCT-T 76063 | | || || ||| ||||| |||||||| |||||||| ||||| || | | Sbjct 552166 TAATTGAATATACATCACCTGATGAAGTAGCTGTTTGTAATTTGGCTTCAATTGCATTAT 552225 Query 76064 CCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACA 76123 |||| | ||| || ||| | ||||||| | ||||| | |||| || || Sbjct 552226 GCAAATT-TGTTGATAGAGAAAAAAAAGAATTTGATTTTAAAAAATTATATGATATTACT 552284 Query 76124 AAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACT 76183 || ||| |||| | |||| || | | | ||||| ||||||| ||| || || | Sbjct 552285 AAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAA 552344 Query 76184 GCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGAT 76243 || ||| || |||| |||| |||||||||| | || || ||||| | || || Sbjct 552345 GCTGAAAAATCAAATAAAAGACATCGACCTATTGGAATAGGAGTACAAGGATTAGCAGAC 552404 Query 76244 GTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGT 76303 |||||| | | | || ||| ||| || |||||||| || || | ||| | Sbjct 552405 ACATTTATGCTTTTAAGATATCCATATGAATCTGATGAAGCTAAAGAATTAAATAAAAGA 552464 Query 76304 ATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAA 76363 || |||||||| |||||| | ||| | | || | | |||||| || || || Sbjct 552465 ATATTTGAAACAATGTATTATGCAGCTTTAGAAATGTCTGTTGAATTAGCACAAATACAT 552524 Query 76364 GGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATG 76423 || | ||||| ||| | | ||| || || |||||| | | || ||||||||| Sbjct 552525 GGACCATATGAATCATATAAAGGTAGCCCAGCAAGTCAAGGGATATTACAATTTGATATG 552584 Query 76424 TGGGAAGGTGAAACCA-AGCTCAACTA---CGACTGGGATGTTCTCAAGGAACGCATCAA 76479 | |||| || ||| | | || || || |||||| || | || || | || Sbjct 552585 T-GGAATGTAAAAGTAGATAATAAATATTGGGATTGGGAT-TTATTAAAAAAAAAAATAA 552642 Query 76480 GGA-GAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCAC 76538 | | | | || | | || |||| | | ||||| ||||||||||| || || ||| Sbjct 552643 GTATGCATGGATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCAC 552702 Query 76539 AAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTA 76587 |||| ||||| |||||||||| || |||||||| |||| |||||||| Sbjct 552703 AAATTTTGGGAAATAATGAATCATTCGAACCATATACAAGTAACATCTA 552751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568451603520