Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 370 2e-97 seq11 221 2e-52 seq3 187 5e-42 seq9 84.2 4e-11 seq5 84.2 4e-11 >seq2 Length=1757347 Score = 370 bits (410), Expect = 2e-97 Identities = 563/798 (71%), Gaps = 16/798 (2%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||||| ||| ||| || || ||||| | || | || ||| | Sbjct 1514493 CTTGTAAAGATATTAAATCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAAC 1514434 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | || |||| |||||||||||| || |||||||||| |||||| ||||| | Sbjct 1514433 ATCCTAA-ACATTCTAATAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTT 1514375 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | ||||| | ||| ||||||| | |||||| ||| Sbjct 1514374 GAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCA 1514315 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatt-taatatgatt 49810 || |||| ||||| ||| | | | ||||| || |||||||| || ||||| | Sbjct 1514314 ACTGCTTCTTTAACTATATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACT- 1514256 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| |||||||| ||||||||||||||||||||| |||||| || |||||||| Sbjct 1514255 ---ATAAATTAAACAGTTAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATT 1514199 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | | ||||||| |||||| |||| ||||| Sbjct 1514198 ACTAAATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATTGCACAAAAAC 1514140 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | | | ||| ||||| || || ||||| ||| |||| |||||| || ||| | | Sbjct 1514139 TTCCACTAAATAATATTCCTTCTACACATGCATTAGCTACAATTCTTTCTGCAA--AAGA 1514082 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 |||| | ||| |||||| || |||||| |||||| |||||||||| ||||||| Sbjct 1514081 ATTTGT-ATCATTTATCCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATAT 1514023 Query 50050 TTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTA 50109 |||| ||||| | |||||| | | |||| | |||| Sbjct 1514022 TTTCAATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTA 1513963 Query 50110 ATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTC 50169 ||||| ||| |||||||||||| | ||| | |||||||||||| |||||||||| | Sbjct 1513962 ATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTT 1513903 Query 50170 TTGCTTCTGAATA--CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAAT 50227 ||||||| |||| | ||||| || ||| | | ||||| || ||||||| Sbjct 1513902 TTGCTTC--AATAATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAAT 1513845 Query 50228 ACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTT 50287 |||||| |||||| || ||||||||||| | ||| ||||||||||||||||| | || Sbjct 1513844 TCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATT 1513785 Query 50288 TAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGA 50347 ||| ||||| || || | |||| | |||||||| | |||||| |||||||||||| Sbjct 1513784 TAATTTTTCAAAATCTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGA 1513725 Query 50348 TGCTACGGATTTTTTATA 50365 ||| | | |||||| || Sbjct 1513724 AGCTTCAGCTTTTTTGTA 1513707 >seq11 Length=1061054 Score = 221 bits (244), Expect = 2e-52 Identities = 187/230 (81%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| |||||||||||||| | ||||| |||||||||||| Sbjct 508902 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 508843 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| |||||||| |||||||| ||||||||||| Sbjct 508842 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 508783 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| ||||| |||| ||| || | |||| Sbjct 508782 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 508723 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| |||||||||||||| | ||| |||||||| Sbjct 508722 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508673 Score = 212 bits (234), Expect = 1e-49 Identities = 185/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| |||||||||||||| | ||||| |||||||||||| Sbjct 509130 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 509071 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| |||||||| |||||||| ||||| ||||| Sbjct 509070 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGA 509011 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| |||||| ||| ||||| |||| ||| || | |||| Sbjct 509010 GGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 508951 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| |||||||||||||| | ||| |||||||| Sbjct 508950 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508901 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | ||| |||| |||||| || | ||||| || ||||| ||||| Sbjct 509356 ACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGA 509297 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||||| |||| || |||||||| |||||||| |||||||| ||||| ||||| || Sbjct 509296 TAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGG 509237 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||||||||| |||||| ||| ||||| |||| ||| || | |||||| Sbjct 509236 AATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTAC 509177 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || |||||||||||||| | ||| |||||||| Sbjct 509176 ATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 509129 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| |||||||||||||| | ||||| |||||||||||| Sbjct 508674 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 508615 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| |||||||| |||||||| ||||||||||| Sbjct 508614 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 508555 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| ||||| |||| ||| || | ||| Sbjct 508554 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCT 508495 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || ||||| || ||||| || Sbjct 508494 ACATCAAGAGTTATAGTTTTTCC 508472 >seq3 Length=1857262 Score = 187 bits (206), Expect = 5e-42 Identities = 171/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| |||||||| || | |||||| |||||||| ||||||||||||| |||| Sbjct 1608531 TATTACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATC 1608590 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || || ||||| |||||||| |||||||| ||||||||||| || |||||||||||||| Sbjct 1608591 TTCTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATC 1608650 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| |||||| ||| ||||| |||| || || | ||| || || ||||| || || Sbjct 1608651 TTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGT 1608710 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||||||||| | ||| || |||||||| Sbjct 1608711 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1608746 >seq9 Length=861284 Score = 84.2 bits (92), Expect = 4e-11 Identities = 169/236 (72%), Gaps = 26/236 (11%) Strand=Plus/Minus Query 93274 AATTA-AATA--TAGTTCATTACAAATATTAAATTTTTTCAAACCAAATCATGAAATAAG 93330 ||||| |||| ||||| |||| |||||||||| || ||| |||| || ||||| Sbjct 544901 AATTATAATAATTAGTTAATTA-AAATATTAAAATT----AAATTAAAT-ATATAATAAT 544848 Query 93331 CAATATAAAATTTATTCCTATTAATAATATTAATTCAATGATTGAT-TTATTTTATTACA 93389 |||||| |||||| || || ||| ||||| ||| ||| || ||||| ||||||| Sbjct 544847 TAATATATTATTTATA---ATAAAATATAATAATTTAATTATTAATATTATTATATTACA 544791 Query 93390 TTCAAAGACATTTAATCTATTGTTAAATATTAAGTAATATA----AATAATATTTTATTT 93445 | ||| | |||| ||| ||||| ||| |||||| | || ||||||| || Sbjct 544790 T--AAATA---TTAAAATATAAATAAATTTTATTAAATATATTATATTATTATTTTAATT 544736 Query 93446 TTAGTCAATATGACGAAATATATCAAAT-TAA-CTaaaaaaaT-ATTCAATTTATT 93498 ||||||||||| | ||||| || | || ||| |||| |||| ||| || ||||| Sbjct 544735 TTAGTCAATAT-ATTAAATAAATAATATATAATTTAAATAAATAATTAAAATTATT 544681 >seq5 Length=2795668 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 129708 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 129766 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 884420 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 884478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478057497900