Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 336 4e-87 seq11 212 1e-49 seq3 176 8e-39 seq5 84.2 4e-11 >seq2 Length=1757347 Score = 336 bits (372), Expect = 4e-87 Identities = 582/844 (69%), Gaps = 22/844 (3%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || || | |||| ||||||| || || ||||||||||||| ||| ||||||||| Sbjct 1514536 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 1514477 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATA-TAA 38950 | ||| ||| || || ||||| | || | || ||| | | || |||| ||| Sbjct 1514476 TCCATCCAATTGAAAGGGTTTTTAGAATGAAAAACTTTAGAACATCCTAA-ACATTCTAA 1514418 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||| || |||||||||| |||||| |||| | ||||||| || | ||| Sbjct 1514417 TAATCTATCAGCAACAAATTCAATATATTGAGACATGAGCCTTGAATTCATTCCAATTAA 1514358 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | | | ||||| | ||| ||||||| | |||||| ||| || |||| ||||| ||| Sbjct 1514357 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1514298 Query 39071 cataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACATG 39129 | | | ||||| || |||||||| || ||||| | ||| | |||||| Sbjct 1514297 ATTTTGAACAACATTTTCTGGTAATTTATTTTCTAATAAACT----ATAAATTAAACAGT 1514242 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC-T 39188 |||||| ||||||||||| || |||||| || |||||||||||||| ||||| || | Sbjct 1514241 TAAAATCAGTATGTAAACCCTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCAT 1514182 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 | ||| || | | ||||||| |||||| |||| |||||| | | ||| ||||| Sbjct 1514181 GTAATTTATTTTGT-TTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATT 1514123 Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT-TATCATCTAAAAT 39307 || || ||||| ||| |||| |||||| || |||| | | || |||||| | || Sbjct 1514122 CCTTCTACACATGCATTAGCTACAATTCTTTCTGCAAA-AGAATTTGTATCATTT---AT 1514067 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| || ||||| |||||| |||||||||| ||||||||||| ||||| | ||| Sbjct 1514066 CCATTTAGCAGCCCATAATGCTTTATTTTTGATAGCTGGTATATTTTCAATAGCATGAAA 1514007 Query 39368 TAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATT 39425 ||| || || | ||| || Sbjct 1514006 TAAATTTAAT--CTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTT 1513949 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA- 39484 |||||||||| | ||| | |||||||||||| |||||||||| ||||||| |||| Sbjct 1513948 TCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTC--AATAA 1513891 Query 39485 -CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 | ||||| || ||| | | ||||| || ||||||| |||||| ||||| Sbjct 1513890 TTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACAATTCCATCACTTGCTG 1513831 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 39603 | || ||||||||||||| ||| ||||||||||||||||| | ||||| ||||| || Sbjct 1513830 CAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTGACATTTAATTTTTCAAAAT 1513771 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 || | |||| | |||||||| | |||||| ||||||||| || ||| | | ||||| Sbjct 1513770 CTTTCAAATCGCTCGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTT 1513711 Query 39664 TATA 39667 | || Sbjct 1513710 TGTA 1513707 >seq11 Length=1061054 Score = 212 bits (234), Expect = 1e-49 Identities = 185/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| |||||||||||||| | ||||| |||||||||||| Sbjct 508902 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 508843 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || |||||||| ||||||||||||||||| ||||| ||||| Sbjct 508842 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 508783 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| |||||| ||| ||||| |||||||| || | |||| Sbjct 508782 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 508723 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| |||||||||||||| | || |||||||| Sbjct 508722 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508673 Score = 212 bits (234), Expect = 1e-49 Identities = 185/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| |||||||||||||| | ||||| |||||||||||| Sbjct 509130 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 509071 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || |||||||| ||||||||||||||||| ||||||||||| Sbjct 509070 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGA 509011 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||||||||| |||||| ||| ||||| |||||||| || | |||| Sbjct 509010 GGAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCT 508951 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| |||||||||||||| | || |||||||| Sbjct 508950 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508901 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || ||| |||| |||||| || | ||||| ||| ||||| || || Sbjct 509356 ACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGA 509297 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | || || |||||||| ||||||||||||||||| ||||||||||| || Sbjct 509296 TAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGG 509237 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||||||||| |||||| ||| ||||| |||||||| || | |||||| Sbjct 509236 AATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTAC 509177 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || |||||||||||||| | || |||||||| Sbjct 509176 ATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 509129 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| |||||||||||||| | ||||| |||||||||||| Sbjct 508674 ATACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCA 508615 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || |||||||| ||||||||||||||||| ||||| ||||| Sbjct 508614 GATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGA 508555 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| |||||| ||| ||||| |||||||| || | ||| Sbjct 508554 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCT 508495 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || ||||| || ||||| || Sbjct 508494 ACATCAAGAGTTATAGTTTTTCC 508472 >seq3 Length=1857262 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| |||||||| || | |||||| ||||||||| || ||||| | || | || Sbjct 1608531 TATTACCAAATGTAAGGTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATC 1608590 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || || ||||| ||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct 1608591 TTCTAACTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATC 1608650 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| |||||| ||| ||||| ||||| || || | ||| || || ||||| || || Sbjct 1608651 TTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGT 1608710 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT----ATTATAAAAA 172082 ||| || ||||||||||| | || || |||||||| | |||||||| Sbjct 1608711 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAGTATAAAAA 1608760 >seq5 Length=2795668 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 109121 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 109179 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 884420 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 884478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134257613200