Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11 242 1e-58 seq5 145 2e-29 seq14 116 1e-20 seq2 84.2 6e-11 >seq11 Length=1061054 Score = 242 bits (268), Expect = 1e-58 Identities = 799/1227 (65%), Gaps = 40/1227 (3%) Strand=Plus/Minus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||| ||| |||| ||||| ||||| || |||||| | | |||||| || | Sbjct 552498 TTTCTAAAGCTGCATAATACATTGTTTCAAATATTCTTTTATTTAATTCTTTAGCTTCAT 552439 Query 155371 CAGATGTAAATGCGATATCCATCTTGAAA-----AATGTGTCGGCTAAACCCTGAACTCC 155425 ||||| | ||| |||||| || ||| |||||||| ||||| || || ||||| Sbjct 552438 CAGATTCATATG-GATATC----TTAAAAGCATAAATGTGTCTGCTAATCCTTGTACTCC 552384 Query 155426 AATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT----CTTCTTGT-TTGGGTAA 155480 || || | || ||||| || | ||| || || | |||||| |||||||| Sbjct 552383 TATTCCAATAGGTCGATGTCTTTTATT-----TGATTTTTCAGCTTCTTTAATTGGGTAA 552329 Query 155481 AAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAAT 155540 |||| |||||||| |||| ||||||| || | | || || | || |||| Sbjct 552328 TAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAAT 552269 Query 155541 TTCACATAGTCAAATG--TTTTATCCTC-ATTTACAAACATACCAAGACCAATAGACGCC 155597 || | | |||||| |||| | ||| || ||||| | | | |||| || ||| Sbjct 552268 TTTTTAAAATCAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATTGAAGCC 552209 Query 155598 AGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTCACAGCACAGGT 155655 | |||||| || || || | | || | ||||| || | || ||||| || | | Sbjct 552208 AAATTACAAACAGCTA-CTTCATCAGGT-GATGTATATTCAATTATTTCACAACATAAAT 552151 Query 155656 TAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGT 155715 || || || || || |||||||| || || ||||||||| ||||| ||||| || | Sbjct 552150 TACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTAT 552091 Query 155716 ATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCAC 155775 ||| || ||||| || || || || || | | ||| | ||| | || Sbjct 552090 ATAACATATATGGTACACCAGTTTCTATTTGACTTTGTAAAATAGCAAACCATAAATCTT 552031 Query 155776 GGGCATTAA----TTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTT 155831 | ||| || ||| || | || | | ||| |||||||| |||| | || Sbjct 552030 GTGCAAGAACAGTTTTTTTTCCTAAATTTTC-TTCT---TCATATTTTGTATATAATTTT 551975 Query 155832 CGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGAC 155891 | || ||||| || | ||||| | || || || | || || || | || | | Sbjct 551974 TCAAATTCTTCACCCCAAGATTCACTTAACCCTGGACATTCATTAGGACACATTAGTGTC 551915 Query 155892 CAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAA 155951 ||| || |||| | |||| | | |||||||| |||| ||||||||||||| || Sbjct 551914 CAATTTCTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAAT 551855 Query 155952 AGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCA 156011 | || || || || | || || | || ||||| || | || ||||| ||||| | Sbjct 551854 AAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAA 551795 Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCC 156068 ||||||| ||| ||| || | ||| | ||||||| ||| || || || ||||| Sbjct 551794 ATATCAGAATGCCATGGTTCTATATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCT 551735 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 ||||||||||| | ||| || | ||| || || | || ||| |||| | |||||| || Sbjct 551734 TGATCTACATATCTAGCTGTATCATTAAAAACTCTTAACATTGGAACTAAACCATTTGAT 551675 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 | ||||| ||||| | ||||| ||| | | | || || | | | ||| Sbjct 551674 ATACCATTAGTTCCTCTAATATAAGAATTCTGTCCTCTTATATCTTGTACAGCAACTCCT 551615 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 ||||| || | |||| |||| ||| |||| |||| || | || |||||||| Sbjct 551614 ATACCTCCCGCGGTTTTACTAATTAAAGCACATTGTTTTAATGTTTCAAATATACCTTCG 551555 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 |||||||| || ||| |||| |||| |||| || | ||| || ||||||||||| Sbjct 551554 ATAGAATCTGATTTCATAGATAATAGAAAGCAAGATGACATTTGTGGACGTGGTGTTCCT 551495 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTC 156368 | || |||| |||||| || ||||| | ||||| || | |||||| ||| ||||| Sbjct 551494 GAATTAAATAATGTAGGAGTAGCATGTGTGAAATATTTCTGAGACATTAAATGATATGT- 551436 Query 156369 TCCTTAATC-TTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATG 156427 | || || | || ||||||| | || || | || || || ||||| | | ||| Sbjct 551435 TTCTAAAGCTTTTTCAAGATCATCTATATGTATTCCAATTGATACTCTCATTAATAAATG 551376 Query 156428 CTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTT 156487 || ||||| || | ||| | |||||| | | |||| | ||| | ||||| Sbjct 551375 TTGTGGACGTTCAATAATTTTATTGTTAATTCGTAATAAATATGATCTTTCTAATGTTTT 551316 Query 156488 AAACCCGAAATAATCAAACAGAAAATC 156514 || || ||||||||| | |||||| Sbjct 551315 GAATCCAAAATAATCATAGTTAAAATC 551289 >seq5 Length=2795668 Score = 145 bits (160), Expect = 2e-29 Identities = 233/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || ||||| |||||| ||||| ||||| ||||| |||| | || || | || || | Sbjct 1276022 CTTCTTTTAGAACCAACTGCATCTATTTCATCAATAAAAACAATGCAAGGTGCATGTTTT 1276081 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | || || ||| | ||||||| | ||| || | ||||||| |||||||| || Sbjct 1276082 TTTGCGGTTTGAAAAAGCTCTCTTATTCTTCTTGCACCTACACCAACAAACATTTCTTCA 1276141 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | ||| |||| || || | |||||||||||||||||| | || || || Sbjct 1276142 AATTCTGAACCAGATGCTTGGATAAAAGGTACATTTGCTTCGCCTGCAATAGCTCTAGCA 1276201 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | ||| || |||||||||||| || ||||| | || || || | |||||| Sbjct 1276202 ATTAATGTTTTTCCTGTTCCAGGTTCACCTGATAATAATATACCTTTGGGCAATTTTGCA 1276261 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| || |||| || | | |||||| | || | ||||| | |||||| | | Sbjct 1276262 CCAATTTTAGTAAATTTATCTGAATTTTTTAAATAATCAATTATTTCTTGAAGTTCTTGT 1276321 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | || ||||| ||| |||||| || ||||| Sbjct 1276322 TTTACTTCGTCACACCCTTTTACATCTGCTAAAGT 1276356 >seq14 Length=1824586 Score = 116 bits (128), Expect = 1e-20 Identities = 322/482 (67%), Gaps = 15/482 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | || | || || ||||| |||||| ||| |||||| || Sbjct 1159882 CTATCAAATCTTCCGGGTCTTGTAATAGCAGGATCTAAAATATCGATTCTATTTGTTCCT 1159823 Query 288910 GCCAATACAACAA-TAGAT--TCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTT 288964 || || ||||| | | ||| | | | | || |||||||| || | || || | Sbjct 1159822 GCTAAAACAACTACTTGATCATTAGATGTATGGAACCCATCCAT--TTCTACAAGCATCT 1159765 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCtt 289023 |||| | || | ||| |||||||||||| || | || | ||| | | | || || Sbjct 1159764 GATTTAAAGTATTTTCTCTTTCATCATTTCCTCCACCTGCAAAACCTCCCTTTGATCTTT 1159705 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | || ||||||||||| ||||| || || ||||| | | | || | || || ||| || Sbjct 1159704 TCCTT-CCAACAGCATCTATTTCATCTATAAAAATAATAGATGGTGCATGTTTTCTTGCT 1159646 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 ||||| ||||||| || | |||| ||| | || ||| ||| ||| | ||| ||| Sbjct 1159645 TGAGCAAACAATTCTCGAACTCTCGATGGTCCTATTCCTACAAACACTTCAATAAAATCA 1159586 Query 289144 --GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 | |||| | || || | ||||| ||||| || || || || | || | | Sbjct 1159585 CTTCCACTGATA--TTAAAAAAAGGAACATTAGCTTCTCCAGCAACAGCTTTTGCTAATA 1159528 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 ||| || || ||||| |||| || ||||| | || ||||||| |||||| || Sbjct 1159527 ATGTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGCACC-T 1159469 Query 289262 CAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | |||| |||||| | ||| | || ||||| || |||| |||| || ||| | |||| Sbjct 1159468 AATACTTGATATTTTGCTGGGTTTTTCAAAAAATCAACAAATTCCATAATTTCTTCTTTT 1159409 Query 289321 GC 289322 || Sbjct 1159408 GC 1159407 >seq2 Length=1757347 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 408942 AAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCG 409001 ||| || |||| |||||| |||||||| |||||||||||| ||||| |||||||||||| Sbjct 362414 AAGATCCATTAGCTCAGT-GGTTAGAGCGTCGGTCTTATGTACCGAAGGTCGTGGGTTCG 362356 Query 409002 AGTCCCACATAGAACATT 409019 | ||||||| || |||| Sbjct 362355 AAACCCACATGGATCATT 362338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814695919898