Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq3 98.7 8e-16 >seq11 Length=1061054 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| ||||| || |||||||| || | || || || | Sbjct 508673 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508732 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| || |||||||| | || |||||| Sbjct 508733 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 508792 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || ||||| | || |||| |||||| | | ||||| || Sbjct 508793 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 508852 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || || || | || |||||| | |||| || Sbjct 508853 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 508899 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| ||||| || |||||||| || | || || || | Sbjct 508901 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCC 508960 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || || || ||||| || | || || ||| Sbjct 508961 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAA 509020 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || ||||| | || |||| |||||| | | ||||| || Sbjct 509021 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAAT 509080 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || || || | || |||||| | |||| || Sbjct 509081 ATTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGG 509127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| ||||| || || || || || | || || || | Sbjct 509129 ATGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCC 509188 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| || |||||||| | || || ||| Sbjct 509189 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCAA 509248 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || ||||| | || |||| |||||| | | || || ||| Sbjct 509249 CAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAAC 509308 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| || || || | || |||||| | |||| || Sbjct 509309 ATTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGG 509355 >seq3 Length=1857262 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| ||||| |||||||| ||||| || || | || || || Sbjct 1608746 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1608687 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | || ||| || ||| || |||||||| | || ||| Sbjct 1608686 TCTGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 1608627 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | |||| ||| || |||||| | || |||| ||||||| | | || || Sbjct 1608626 CAACAAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTAT 1608567 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||||||||| || || || || |||| Sbjct 1608566 AATATTCAAAAAGAGTCAACCTTACATTTGGT 1608535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412840825147922