Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq11 232 1e-55 seq3 185 1e-41 >seq11 Length=1061054 Score = 232 bits (256), Expect = 1e-55 Identities = 188/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||||||||| |||||||| || ||| |||||||||||| || Sbjct 508674 TGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCCG 508733 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| ||||||||| || || || ||||||| Sbjct 508734 ATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATCCCTCCTGATCAAC 508793 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| |||||| || | |||||||||| Sbjct 508794 AAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAATA 508853 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | |||||||| ||| ||||||||||||||| Sbjct 508854 TTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTA 508901 Score = 226 bits (250), Expect = 4e-54 Identities = 187/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||||||||| |||||||| || ||| |||||||||||| || Sbjct 508902 TGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTAGAACCATCCG 508961 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| |||||| || ||||| || || |||| Sbjct 508962 ATACTATTGAAAATGTTAAAGCTAAAATCCAAGATAAAGAGGGAATTCCTCCTGACCAAC 509021 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| |||||| || | |||||||||| Sbjct 509022 AAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGATTATAATA 509081 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | |||||||| ||| ||||||||||||||| Sbjct 509082 TTCAAAAAGAATCAACTTTACATTTAGTTTTAAGATTAAGAGGAGGTA 509129 Score = 206 bits (228), Expect = 4e-48 Identities = 168/204 (82%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 146056 CAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATA 146115 |||||||||| || ||| |||||||||| | ||||||||| ||||||| ||| || Sbjct 508470 CAGGAAAAACTATAACTCTTGATGTAGAGCCATCTGATACTATTGAAAATGTTAAAGCTA 508529 Query 146116 AAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAAC 146175 |||| ||| ||||||||| ||||| || |||||||||||| | |||||||| || |||| Sbjct 508530 AAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAAAGATTAATTTTTGCTGGGAAAC 508589 Query 146176 AATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATT 146235 ||||||| ||| |||||| || | ||||||||||| ||||||||||| ||| | |||| Sbjct 508590 AATTAGAAGATGGTAGAACACTATCTGATTATAATATTCAAAAAGAATCAACTTTACATT 508649 Query 146236 TAGTATTACGATTAAGAGGAGGTA 146259 |||| ||| ||||||||||||||| Sbjct 508650 TAGTTTTAAGATTAAGAGGAGGTA 508673 Score = 206 bits (228), Expect = 4e-48 Identities = 182/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||||||||| ||||| || || ||| |||||||||||| || Sbjct 509130 TGCAGATTTTTGTAAAAACATTAACTGGAAAGACTATAACTCTTGATGTAGAACCATCCG 509189 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| ||||||||| ||||| || || |||| Sbjct 509190 ATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGACCAAC 509249 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| |||||| || | || ||||| | Sbjct 509250 AAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTAGAACACTATCTGACTATAACA 509309 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||||||||| || | ||| |||| ||| |||||||||||||| Sbjct 509310 TTCAAAAAGAATCAACCTTACATCTAGTTTTAAGATTAAGAGGAGGT 509356 >seq3 Length=1857262 Score = 185 bits (204), Expect = 1e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| ||||||||||| ||| ||||||| |||| | Sbjct 1608742 TGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCTG 1608683 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| ||| |||||| ||| ||||||||| ||||| || ||||||| Sbjct 1608682 ACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAAC 1608623 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||| ||||| ||| ||||| ||| | || ||||||| Sbjct 1608622 AAAGATTAATTTTTGCTGGAAAACAGTTAGAAGATGGCAGAACATTATCTGACTATAATA 1608563 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTA 146243 | |||||||| || || | ||||| ||| || Sbjct 1608562 TTCAAAAAGAGTCAACCTTACATTTGGTAATA 1608531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786164886629680