Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq8 111 2e-19 seq12 107 2e-18 seq2 107 2e-18 seq11 91.5 2e-13 seq13 84.2 3e-11 >seq8 Length=706722 Score = 111 bits (122), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 192930 GAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGT---TACCACAGATATT 192986 || ||| || ||||| |||| | ||||| |||||||| | || ||| | || || Sbjct 466418 GATACATTAGCTCATTTATTATACTATCCTCAAAAACCATTAGTATGTACAAAAGCTACA 466477 Query 192987 GCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCT 193046 | || ||||| | || | |||| ||| ||| || ||||| ||||| || || Sbjct 466478 G-AATATTTAC--ATTTTAAAGATTTACCAGCTGGAATCAATGCAATTGTGGCAATTATG 466534 Query 193047 TGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGA 193106 || ||||| || |||||||||||||| ||| | ||| | ||| || |||||||||| || Sbjct 466535 TGTTATACAGGATATAATCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGA 466594 Query 193107 GGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGAAA 193152 ||||||||| | | | || |||| ||||||||| |||||||| Sbjct 466595 GGATTATTTAGAAGTGTATTTTATCGTACATATACTAGTGAAGAAA 466640 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193790 TAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 193849 |||||| |||||||| ||||| | |||||| | | ||||||||||| | |||||||| Sbjct 467638 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 467697 Query 193850 GCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193908 |||||||||||| |||| | |||| ||||| | ||||||| || | | Sbjct 467698 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 467756 Query 193909 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTG 193968 | || ||| ||| | |||||||| |||||||| ||| ||||| || |||||| Sbjct 467757 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTATGATATCTCATGGAT 467816 Query 193969 CTACTCAATTCTTGAATGAA 193988 || || || | || || ||| Sbjct 467817 CTGCTAAAATGTTAAAAGAA 467836 >seq12 Length=891477 Score = 107 bits (118), Expect = 2e-18 Identities = 394/607 (65%), Gaps = 25/607 (4%) Strand=Plus/Plus Query 168519 ATTCTTAAAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGAT 168578 ||| || ||||| | |||||| |||||| ||| ||| || ||| ||| || Sbjct 690232 ATTATTGAAGAATTATTATGGTTTATAAGAGGAGAAACAAATGGAAATACATTGTTAGAA 690291 Query 168579 ATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATT-TATGTGGTTT 168637 | | ||| | | | ||| | | |||||| | | |||||||||||| || || Sbjct 690292 AAAAATGTAAGAATATGGGAAGCTAATGGAACAAGAGAATTTTTAGATAATAGAAAATTA 690351 Query 168638 TACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGG 168697 | | | ||| ||| |||| | ||||| ||||||||||| |||||||||||| || Sbjct 690352 TTTC-ATAGAGAAGTTAATGATCTTGGTCCTATTTATGGATTCCAATGGAGACATTTTGG 690410 Query 168698 AGCTCAATATATTGA-CTG--TGATACAGATTACACCGGACAAGGAGTAGACCAATTAAG 168754 ||| |||||| || || ||||| |||| | | |||| || || ||| ||| Sbjct 690411 TGCTGAATATACAGATATGCATGATA---ATTATAAAGATAAAGGTGTTGATCAACTAAA 690467 Query 168755 TCAAACTATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT-- 168812 | | ||||||| | | || |||| | |||| || |||| || || || Sbjct 690468 AAATATTATAAATTTAATTAAAAATGATCCTACATGTAGACGA--ATTATTTTAT-GTGC 690524 Query 168813 -TGGGATGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATT 168871 ||| ||||| | | | |||||||||| | || || ||||| | |||| ||||| Sbjct 690525 ATGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCATGTCATATTTTATGTCAATT 690584 Query 168872 TTATG----TAAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATT 168927 ||||| | | | |||| | ||| | ||| ||||||||||||| ||||| Sbjct 690585 TTATGTTTTTGATGGAAAATT--ATCATGTATT-----ATGTATCAAAGATCTTGTGATT 690637 Query 168928 TAGGATTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTA 168987 ||||| ||||||| || | ||| |||| | |||||| | || ||| | || || Sbjct 690638 TAGGACTAGGAGTTCCATTTAACATTGCTTCTTATTCTATATTTACATATATGATAGCAC 690697 Query 168988 AATGGTGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATT 169047 || ||||| || || | | ||||| ||| || || ||| ||| || ||| Sbjct 690698 AAGTATGTAACTTACAACCAGCTGAATTTATACATGTATTGGGTAATGCTCATGTTTATA 690757 Query 169048 CAAACCATGTTGAACCTTTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATG 169107 || ||| ||||| ||||| |||| || || |||| || ||| |||| || | | Sbjct 690758 ATAATCATATTGAAAGCTTAAAAATTCAGTTAAATAGAACTCCTTATCCTTTCCCTACTC 690817 Query 169108 TTAAATT 169114 ||||||| Sbjct 690818 TTAAATT 690824 >seq2 Length=1757347 Score = 107 bits (118), Expect = 2e-18 Identities = 253/380 (67%), Gaps = 14/380 (4%) Strand=Plus/Plus Query 163000 TAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACA 163059 ||||||||||||| | ||| ||| |||| ||||| | | ||| | || || ||| Sbjct 527655 TAAGGTTGCTCAACTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAATC 527714 Query 163060 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 163119 | ||| ||||||| || || | || ||| ||||||||| ||||||| ||| Sbjct 527715 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 527774 Query 163120 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 163179 || | ||||| ||| |||||||||| ||| |||||| ||||||||| | | || Sbjct 527775 TTTTTTAGAACCATGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 527834 Query 163180 ATCAAGATATATTTATACCAAAC-CAAATAAAATATTAAAATATATATTTAGAGAAGAAG 163238 | | || ||||| | ||| |||| || | | || || |||||||| ||| | | Sbjct 527835 AGCTAGGTATATATTTACAAAACTTGCATCATCCACTAGAA-GTATATTTAATGAATATG 527893 Query 163239 ATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTGTTCATTTTA 163286 |||| || |||||||| ||| | || || || ||||| ||| || Sbjct 527894 ATGATCCGATTTTAAAATATTTAAATGAAGAAGGACAAAAAATCGAACCACAATATTATA 527953 Query 163287 TCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGTCAT 163346 | ||||| |||||| ||| || | ||||| | | || || ||||| |||| |||| Sbjct 527954 TACCAGTTATTCCAACGATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 528013 Query 163347 GTTTTATCCCTCAATATAAT 163366 ||||| || | |||||| Sbjct 528014 CATTTATTCCAAATTATAAT 528033 >seq11 Length=1061054 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 || ||||| || |||| |||||||| | |||||||||||| | |||||||| ||| Sbjct 297894 ATATTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 297835 Query 193854 GCTAGAAGTC-ATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCA 193912 |||||| || | || | || | | || ||| |||||||||| | ||||| || | Sbjct 297834 GCTAGATCTCGAGGGCCTAGACAATTATTAACA-CGACAACCAACTGAAGGTCGATCAAA 297776 Query 193913 AGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTG 193951 || ||||| |||||| |||| |||||||| | ||| || Sbjct 297775 AGAAGGAGGATTAAGACTTGGCGAAATGGAAAGAGATTG 297737 >seq13 Length=1528798 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 51856 AAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 51915 ||||||| ||| |||| ||| || || |||| ||| | |||||| || | |||||| Sbjct 424279 AAAGACATATGACTGATGAAGATTATATATTATTTAATCGACAACCATCATTACATAAAA 424220 Query 51916 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTGG 51975 ||| | ||||| |||||| || |||||| | ||||| | Sbjct 424219 TGAGTATTATGGGGCATAAAGCTAAAATATTGCCTTATTCTACATTTCGTTTAAATTTAG 424160 Query 51976 CTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTC 52035 || | ||| | |||||||||| ||||||||||| ||||||||||| |||||| | ||| Sbjct 424159 CTGTAACTTCACCATATAATGCCGATTTTGATGGTGATGAAATGAACTTACATTTAGCTC 424100 Query 52036 AATCATATGGAGCTACTGCTGAATTACAAGAATTAA 52071 ||||| ||| | | | ||||| || || | |||| Sbjct 424099 AATCACATGAAACCAGATCTGAAATAAAACATTTAA 424064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635176377283120