Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq12 136 5e-27 seq2 122 1e-22 seq8 91.5 2e-13 seq11 89.7 7e-13 seq5 87.8 2e-12 >seq12 Length=891477 Score = 136 bits (150), Expect = 5e-27 Identities = 428/647 (66%), Gaps = 26/647 (4%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| |||||| | || ||| | ||| | | |||||||||||| || || | Sbjct 690173 AATTTAATTTAAATCAAT--ATTTT-CCATTATTAACAACAAAAAAATTATTTGTGCGAG 690229 Query 180417 ATATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAAT---TTGTTAA 180473 |||| || |||||||||||||| | || | ||| ||||||| ||| |||||| Sbjct 690230 GTATTATTGAAGAATTATTATGGTTTATAAGAGGAGAAACAAATGGAAATACATTGTTAG 690289 Query 180474 ATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTG 180533 | | | || | | | | ||| | | |||||| | | | ||||||||| | | Sbjct 690290 AAAAAAATG---TAAGAATATGGGAAGCTAATGGAACAAGAGAATTTTTAGATAATAGAA 690346 Query 180534 GATTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACA 180591 ||| |||| | || ||| |||| | || || ||||||||||| ||||||||||| Sbjct 690347 AATT--ATTTCATAGAGAAGTTAATGATCTTGGTCCTATTTATGGATTCCAATGGAGACA 690404 Query 180592 TGCAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAAT 180650 | || ||| |||||| || | || || || |||| | ||||| | || ||| Sbjct 690405 TTTTGGTGCTGAATATACAGA-TATGCATGATAATTATAAAGATAAAGGTGTTGATCAAC 690463 Query 180651 TAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATA 180710 ||| | ||||| | || |||||| |||| ||| || |||| || || | Sbjct 690464 TAAAAAATATTATAAATTTAATTAAAAATGATCCTACATGTAGACGAATTATTTTATGTG 690523 Query 180711 GTTGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAAT 180770 ||||||||| | | ||| | ||||| | || |||||||| ||| |||| Sbjct 690524 CATGGAATGTAAAAGATTTAGATAAAATGGCATTACCTCCATGTCATATTTTATGTCAAT 690583 Query 180771 TTTATGTTAGAAATA-AAATTTATTTAG-ATTGCCAATTGTATCAAAGATCTGCAGATTT 180828 |||||||| || ||| |||| | ||| |||||||||||||| ||||| Sbjct 690584 TTTATGTTTTTGATGGAAAATTATCATGTATTA-----TGTATCAAAGATCTTGTGATTT 690638 Query 180829 AGGATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTCA 180886 |||| |||| || |||| ||| ||||||| ||||| || ||| ||| || | | | Sbjct 690639 AGGACTAGGAGTTCCATTTAACATTGCTTCTTATTCTATATTTACATATATGATAGCAC- 690697 Query 180887 AAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATAT 180946 |||| || || ||| || | ||||||| || || || ||| |||||| ||| Sbjct 690698 AAGT-ATGTAACTTACAACCAGCTGAATTTATACATGTATTGGGTAATGCTCATGTTTAT 690756 Query 180947 TCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAAACCCTTA 180993 ||| |||||||| ||||||||||| |||| |||| ||||| Sbjct 690757 AATAATCATATTGAAAGCTTAAAAATTCAGTTAAATAGAACTCCTTA 690803 >seq2 Length=1757347 Score = 122 bits (134), Expect = 1e-22 Identities = 257/380 (68%), Gaps = 14/380 (4%) Strand=Plus/Plus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 |||||||||||| | |||||| ||||||||||| | || ||| | ||||| ||| Sbjct 527655 TAAGGTTGCTCAACTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAATC 527714 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | ||||||| ||||| | || || ||||| ||| |||||||||||| Sbjct 527715 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 527774 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || | |||||| ||| || ||||||| |||| ||||| ||||||||| || | || Sbjct 527775 TTTTTTAGAACCATGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 527834 Query 173068 ATCAAGGTATATTTATACTAAACC-GCATAAAATTTTAAAATATATATTTAGAGAAGAAG 173126 | | |||||||| | ||| |||| |||| | || || |||||||| ||| | | Sbjct 527835 AGCTAGGTATATATTTACAAAACTTGCATCATCCACTAGAAG-TATATTTAATGAATATG 527893 Query 173127 ATGACCCTATTTTAAT---TTTTACTCCGGAAGGAGAA-----CCAACCAC----TTTTG 173174 |||| || ||||||| ||| | | |||||| || | |||||| || | Sbjct 527894 ATGATCCGATTTTAAAATATTTAAATGAAGAAGGACAAAAAATCGAACCACAATATTATA 527953 Query 173175 TTCCCGTGATCCCTCTTATATTAATTAATGGTTCAATTGGTATAGGAACTGGATGGTCGT 173234 | || || || || || || | ||||| | || ||||||||||||| || | Sbjct 527954 TACCAGTTATTCCAACGATTCTAGTAAATGGATGTGAAGGAATAGGAACTGGATATTCAT 528013 Query 173235 GTTTTATTCCTCAATATAAT 173254 |||||||| | |||||| Sbjct 528014 CATTTATTCCAAATTATAAT 528033 >seq8 Length=706722 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 201075 TTAAATTATCCTCAAAAACCACTTGT---TACAACTGACATTGCAGAAT-TTAATGGTCT 201130 ||| | ||||||||||||||| | || ||||| | | |||||| || | | | Sbjct 466436 TTATACTATCCTCAAAAACCATTAGTATGTACAAAAGCTA---CAGAATATTTACATTTT 466492 Query 201131 AAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAA 201190 ||| || | || ||| || ||||||||||| |||||| ||||| || ||||| || Sbjct 466493 AAA-GATTTACCAGCTGGAATCAATGCAATTGTGGCAATTATGTGTTATACAGGATATAA 466551 Query 201191 TCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 ||||||||||||| | ||| | ||| || | |||||||| |||| ||||| Sbjct 466552 TCAAGAAGATAGTTTAATTATGAATCAATCTTCTATTGATCGAGGATTATT 466602 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 201917 TAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 201976 |||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 467638 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAAT 467697 Query 201977 GCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGT 202035 ||||| |||||| || | |||| | |||||| | ||||||| || | | Sbjct 467698 ACATGCTAGAAGTAGAGGACCTTTAACTATGATTACA-AGGCAACCAACAGAAGGAAGAT 467756 Query 202036 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 | || |||||| | |||||||| ||||||||| ||||||||| Sbjct 467757 CAAGAGATGGTGGTCTTAGATTTGGTGAAATGGAACGAGATTGTAT 467802 >seq11 Length=1061054 Score = 89.7 bits (98), Expect = 7e-13 Identities = 120/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 201921 ATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 201980 || ||||| || |||| ||| ||||| | |||||||||||| | |||||||| ||| Sbjct 297894 ATATTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 297835 Query 201981 GCGAGAAGTC-ATGGTCAAGTAACAA-CATTACATCGTCAACCAAACTG-TGGTCGGTCC 202037 || ||| || | || | || |||| |||| || ||||| ||||| ||||| || Sbjct 297834 GCTAGATCTCGAGGGCCTAG--ACAATTATTAACACGACAACC-AACTGAAGGTCGATCA 297778 Query 202038 CAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 202078 ||| || ||||||||| |||| |||||||||| |||||| Sbjct 297777 AAAGAAGGAGGATTAAGACTTGGCGAAATGGAAAGAGATTG 297737 >seq5 Length=2795668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/235 (69%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 52921 TCAACTTGATATTGGAGACATAGTCAAAAGACAACTAAGAAATGGAGATTGGGTTCTATT 52980 ||||||| | |||||||| ||||| ||||||| | | |||||||| || |||| Sbjct 1892379 TCAACTTAAAATTGGAGATATAGTAGAAAGACATATTTGTGATGGAGATATTGTATTATT 1892320 Query 52981 AAATCGTCAACCAACATTACATAAACCTTCCATG-CAAGCATTTATCGTA--GTTA---T 53034 ||| | ||||| | |||||| | | ||| | | || | || || | || | Sbjct 1892319 TAATAGACAACCCTCTTTACAT----CGT--ATGTCTATTATGTGTCATAAAGCTAGAGT 1892266 Query 53035 TATTGATGGTAAAACTTTAAGGATGAATTTAGCTATGGCTAAAGCTTACAATGCAGATTT 53094 ||| ||| |||||| || | | ||| | | | || |||| ||||||||||| Sbjct 1892265 TATGGATTATAAAACATTTCGTTTTAATGAATGTGTTTGTAGCCCTTATAATGCAGATTT 1892206 Query 53095 TGATGGAGATGAAATGAATTTACATATTCCTCAGTCTTATGAAGCTACTGCAGAA 53149 ||||||||||||||||||||||||| | ||||| || | ||| ||| |||||| Sbjct 1892205 TGATGGAGATGAAATGAATTTACATGTACCTCAAACTGAAGAATCTAGAGCAGAA 1892151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655278738586000