Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20yoelii_20[genbank_20GCA_5F900002385.1_202014-08-27] 154 sequences; 22,755,895 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq11 233 4e-56 seq3 181 2e-40 >seq11 Length=1061054 Score = 233 bits (258), Expect = 4e-56 Identities = 189/229 (83%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | |||||| || | ||| |||||||| || ||||||||||||| Sbjct 508901 TACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG 508842 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||||||| ||||||| |||||| |||||||| |||| |||||||||||| |||| Sbjct 508841 ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAG 508782 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| ||||||||||| || ||||| ||||||||||| ||||| ||||||| Sbjct 508781 GGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTA 508722 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | |||||| || || || || || || |||||||| |||||||| Sbjct 508721 CATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508673 Score = 219 bits (242), Expect = 8e-52 Identities = 186/229 (81%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | |||||| || | ||| |||||||| || ||||||||||||| Sbjct 509129 TACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG 509070 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||||||| ||||||| |||||| |||||||| |||| ||||||||| || |||| Sbjct 509069 ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAG 509010 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || |||||||| || || ||||| ||||||||||| ||||| ||||||| Sbjct 509009 GAATTCCCTCTTTATCTTGGATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTA 508950 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | |||||| || || || || || || |||||||| |||||||| Sbjct 508949 CATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 508901 Score = 214 bits (236), Expect = 4e-50 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || | | ||||| || | || |||||||| || || ||||| ||||| Sbjct 509356 ACCTCCTCTTAATCTTAAAACTAGATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGA 509297 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| ||||||| ||||||| |||||| |||||||| |||| ||||||||| || ||||| Sbjct 509296 TAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGGTCAGGAGG 509237 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| ||||||||||| || ||||| ||||||||||| ||||| |||||||| Sbjct 509236 AATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCTAC 509177 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||| ||||| || || || || |||||||| |||||||| Sbjct 509176 ATCAAGAGTTATAGTCTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 509129 Score = 210 bits (232), Expect = 4e-49 Identities = 169/204 (83%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | |||||| || | ||| |||||||| || ||||||||||||| Sbjct 508673 TACCTCCTCTTAATCTTAAAACTAAATGTAAAGTTGATTCTTTTTGAATATTATAATCAG 508614 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||||||| ||||||| |||||| |||||||| |||| |||||||||||| |||| Sbjct 508613 ATAGTGTTCTACCATCTTCTAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGAG 508554 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| ||||||||||| || ||||| ||||||||||| |||||| || |||| Sbjct 508553 GAATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCTA 508494 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 | || | |||||| || || |||| Sbjct 508493 CATCAAGAGTTATAGTTTTTCCTG 508470 >seq3 Length=1857262 Score = 181 bits (200), Expect = 2e-40 Identities = 159/198 (80%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || ||||| || |||||||| ||||||| |||| || ||||||| ||||||||| Sbjct 1608547 GTTGACTCTTTTTGAATATTATAGTCAGATAATGTTCTGCCATCTTCTAACTGTTTTCCA 1608606 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 ||||| |||| |||||||||||| ||||| |||||||| ||||||||||| || ||||| Sbjct 1608607 GCAAAAATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTAGCTTTA 1608666 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||||||||| || ||| ||||| || || | ||| || || || || || || || Sbjct 1608667 ACATTTTCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1608726 Query 82794 TTTACAAATATCTGCATT 82811 |||||||| || |||||| Sbjct 1608727 TTTACAAAGATTTGCATT 1608744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825262732206